Variant report

Variant	rs72625638
Chromosome Location	chr14:65330747-65330748
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs17102258	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17767870	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17883073	1.00[AFR][1000 genomes]
rs2181127	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs230698	0.95[ASN][1000 genomes]
rs230700	0.95[ASN][1000 genomes]
rs230701	0.95[ASN][1000 genomes]
rs230715	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs230718	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs230723	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs372933	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs380741	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61012404	0.82[EUR][1000 genomes]
rs62621845	1.00[AFR][1000 genomes]
rs66511472	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66883381	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7144515	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144637	0.82[EUR][1000 genomes]
rs72625636	0.95[ASN][1000 genomes]
rs72625637	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72625640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72625641	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72625642	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72625643	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72625644	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72625645	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72625646	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72625647	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72625648	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73279812	0.82[EUR][1000 genomes]
rs73279816	0.82[EUR][1000 genomes]
rs73279823	0.82[EUR][1000 genomes]
rs73279833	0.82[EUR][1000 genomes]
rs73279834	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693408	chr14:65292670-65358576	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv516238	chr14:65327288-65358576	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65319400-65332600	Weak transcription	Right Atrium	heart
2	chr14:65325600-65331800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:65325600-65332200	Weak transcription	Right Ventricle	heart
4	chr14:65325800-65332000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:65327200-65332000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:65327200-65332200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:65328600-65331800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:65328800-65332000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr14:65328800-65332200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr14:65328800-65332200	Weak transcription	Left Ventricle	heart
11	chr14:65328800-65332400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr14:65328800-65332400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr14:65328800-65334000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:65329000-65332000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr14:65329000-65333000	Weak transcription	Fetal Heart	heart
16	chr14:65329200-65333000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr14:65329800-65332200	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr14:65330200-65330800	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr14:65330600-65331000	Weak transcription	Fetal Muscle Leg	muscle
20	chr14:65330600-65331600	Weak transcription	Psoas Muscle	Psoas
21	chr14:65330600-65332000	Weak transcription	K562	blood

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