Variant report

Variant	rs57674166
Chromosome Location	chr14:65421385-65421386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65415735..65418064-chr14:65418807..65421614,2	MCF-7	breast:
2	chr14:65409449..65411345-chr14:65418260..65421533,3	MCF-7	breast:
3	chr14:65380807..65382570-chr14:65419701..65422531,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125954	Chromatin interaction
ENSG00000139998	Chromatin interaction
ENSG00000176153	Chromatin interaction
ENSG00000258289	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10121	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11540871	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17883073	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957416	0.97[ASN][1000 genomes]
rs28493109	0.90[EUR][1000 genomes]
rs57319601	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61012404	0.86[ASN][1000 genomes]
rs61538903	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62621845	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144637	0.86[ASN][1000 genomes]
rs73279812	0.86[ASN][1000 genomes]
rs73279816	0.86[ASN][1000 genomes]
rs73279823	0.86[ASN][1000 genomes]
rs73279833	0.86[ASN][1000 genomes]
rs73279834	0.86[ASN][1000 genomes]
rs73279839	0.86[ASN][1000 genomes]
rs73281764	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73281765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019346	0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs57674166	RAB15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65393400-65422200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr14:65399000-65428000	Weak transcription	NHLF	lung
3	chr14:65401400-65432200	Weak transcription	HUVEC	blood vessel
4	chr14:65401600-65435000	Weak transcription	NH-A	brain
5	chr14:65406600-65438000	Weak transcription	Fetal Kidney	kidney
6	chr14:65409600-65428400	Strong transcription	Fetal Stomach	stomach
7	chr14:65410200-65425200	Weak transcription	HMEC	breast
8	chr14:65410400-65425400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:65410600-65421600	Weak transcription	Pancreas	Pancrea
10	chr14:65411000-65423200	Weak transcription	NHEK	skin
11	chr14:65411000-65437200	Weak transcription	Fetal Lung	lung
12	chr14:65411200-65425400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr14:65411200-65427600	Weak transcription	A549	lung
14	chr14:65411200-65435000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr14:65411400-65421400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr14:65411400-65425200	Weak transcription	Stomach Mucosa	stomach
17	chr14:65411400-65435000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:65411400-65438000	Weak transcription	Small Intestine	intestine
19	chr14:65412400-65438000	Weak transcription	Brain Substantia Nigra	brain
20	chr14:65413000-65426200	Weak transcription	Primary B cells from peripheral blood	blood
21	chr14:65413600-65421400	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr14:65413600-65423400	Strong transcription	Thymus	Thymus
23	chr14:65414200-65422800	Strong transcription	Spleen	Spleen
24	chr14:65414800-65424000	Weak transcription	HSMM	muscle
25	chr14:65414800-65425200	Strong transcription	Primary T cells from cord blood	blood
26	chr14:65415400-65428000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr14:65415400-65432400	Weak transcription	Ovary	ovary
28	chr14:65415400-65438200	Weak transcription	Aorta	Aorta
29	chr14:65415600-65427400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr14:65415600-65437600	Weak transcription	Colonic Mucosa	Colon
31	chr14:65415800-65422000	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr14:65415800-65427200	Strong transcription	Fetal Intestine Small	intestine
33	chr14:65415800-65427800	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr14:65415800-65427800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr14:65416000-65423400	Weak transcription	Fetal Thymus	thymus
36	chr14:65416000-65424000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr14:65416000-65425600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr14:65416000-65427400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr14:65416200-65421600	Weak transcription	HepG2	liver
40	chr14:65416200-65424600	Weak transcription	Primary B cells from cord blood	blood
41	chr14:65417000-65423600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr14:65417400-65426200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr14:65417400-65426600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr14:65417600-65437200	Weak transcription	Adipose Nuclei	Adipose
45	chr14:65417800-65437600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr14:65418000-65426600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr14:65418200-65421600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr14:65418200-65421800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr14:65418200-65428200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr14:65418200-65435400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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