Variant report

Variant	rs61538903
Chromosome Location	chr14:65418564-65418565
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:65418330-65418756	Hela-S3	cervix:	n/a	n/a
2	REST	chr14:65418515-65418776	SK-N-SH	brain:	n/a	chr14:65418637-65418646 chr14:65418551-65418564

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65409449..65411345-chr14:65418260..65421533,3	MCF-7	breast:
2	chr14:65409026..65413439-chr14:65416032..65420633,4	MCF-7	breast:

Variant related genes	Relation type
RAB15	TF binding region
ENSG00000176153	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10121	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11540871	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17883073	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1957416	0.94[ASN][1000 genomes]
rs28493109	0.89[EUR][1000 genomes]
rs57319601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57674166	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61012404	0.83[ASN][1000 genomes]
rs62621845	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7144637	0.83[ASN][1000 genomes]
rs73279812	0.83[ASN][1000 genomes]
rs73279816	0.83[ASN][1000 genomes]
rs73279823	0.83[ASN][1000 genomes]
rs73279833	0.83[ASN][1000 genomes]
rs73279834	0.83[ASN][1000 genomes]
rs73279839	0.83[ASN][1000 genomes]
rs73281764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73281765	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8019346	0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61538903	RAB15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65382400-65420000	Weak transcription	Fetal Brain Male	brain
2	chr14:65383000-65419400	Weak transcription	K562	blood
3	chr14:65393400-65422200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:65399000-65428000	Weak transcription	NHLF	lung
5	chr14:65401400-65432200	Weak transcription	HUVEC	blood vessel
6	chr14:65401600-65435000	Weak transcription	NH-A	brain
7	chr14:65404400-65419600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr14:65404600-65419600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr14:65406600-65438000	Weak transcription	Fetal Kidney	kidney
10	chr14:65409600-65428400	Strong transcription	Fetal Stomach	stomach
11	chr14:65410200-65425200	Weak transcription	HMEC	breast
12	chr14:65410400-65419200	Strong transcription	Lung	lung
13	chr14:65410400-65425400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:65410600-65421600	Weak transcription	Pancreas	Pancrea
15	chr14:65411000-65423200	Weak transcription	NHEK	skin
16	chr14:65411000-65437200	Weak transcription	Fetal Lung	lung
17	chr14:65411200-65425400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr14:65411200-65427600	Weak transcription	A549	lung
19	chr14:65411200-65435000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr14:65411400-65418600	Weak transcription	GM12878-XiMat	blood
21	chr14:65411400-65421400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr14:65411400-65425200	Weak transcription	Stomach Mucosa	stomach
23	chr14:65411400-65435000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:65411400-65438000	Weak transcription	Small Intestine	intestine
25	chr14:65411600-65419400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr14:65412200-65419400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr14:65412200-65420000	Strong transcription	Placenta	Placenta
28	chr14:65412400-65419200	Strong transcription	Brain Germinal Matrix	brain
29	chr14:65412400-65438000	Weak transcription	Brain Substantia Nigra	brain
30	chr14:65412600-65418800	Strong transcription	Dnd41	blood
31	chr14:65413000-65426200	Weak transcription	Primary B cells from peripheral blood	blood
32	chr14:65413200-65419600	Strong transcription	Fetal Muscle Leg	muscle
33	chr14:65413400-65419800	Strong transcription	HSMMtube	muscle
34	chr14:65413600-65419000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr14:65413600-65419200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr14:65413600-65419800	Strong transcription	Fetal Brain Female	brain
37	chr14:65413600-65420400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr14:65413600-65420600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
39	chr14:65413600-65421400	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr14:65413600-65423400	Strong transcription	Thymus	Thymus
41	chr14:65413800-65418800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr14:65413800-65419200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr14:65414000-65419200	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr14:65414200-65422800	Strong transcription	Spleen	Spleen
45	chr14:65414400-65419000	Strong transcription	Gastric	stomach
46	chr14:65414400-65419400	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr14:65414600-65419000	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr14:65414800-65418600	Strong transcription	H1 Cell Line	embryonic stem cell
49	chr14:65414800-65424000	Weak transcription	HSMM	muscle
50	chr14:65414800-65425200	Strong transcription	Primary T cells from cord blood	blood

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