Variant report

No.	Distal block	Cell Line	Cell type
1	chr14:65313751..65315359-chr14:65318780..65321450,2	MCF-7	breast:
2	chr14:65318120..65320301-chr14:65322198..65325013,2	MCF-7	breast:
3	chr14:65317600..65319919-chr14:65379346..65381872,2	MCF-7	breast:
4	chr14:65306058..65308869-chr14:65317790..65319964,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125954	Chromatin interaction
ENSG00000258289	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17102258	0.93[AFR][1000 genomes]
rs230697	0.82[LWK][hapmap];1.00[MEX][hapmap];0.81[YRI][hapmap]
rs230700	0.86[YRI][hapmap]
rs2649194	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs375038	0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs376295	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60454817	0.83[AFR][1000 genomes]
rs61012404	0.81[AFR][1000 genomes]
rs66511472	0.93[AFR][1000 genomes]
rs66883381	0.94[AFR][1000 genomes]
rs7144515	0.93[ASW][hapmap];0.95[LWK][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes]
rs7144637	0.81[AFR][1000 genomes]
rs7152349	1.00[MEX][hapmap]
rs73279812	0.81[AFR][1000 genomes]
rs73279823	0.81[AFR][1000 genomes]
rs73279833	0.81[AFR][1000 genomes]
rs73279834	0.81[AFR][1000 genomes]
rs73279839	0.81[AFR][1000 genomes]
rs8006570	1.00[MEX][hapmap]
rs8019346	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693408	chr14:65292670-65358576	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65315400-65324600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr14:65317400-65320000	Weak transcription	Psoas Muscle	Psoas
3	chr14:65318000-65319400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr14:65318200-65321400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:65318400-65322400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:65318800-65319400	Enhancers	Right Atrium	heart
7	chr14:65318800-65320200	Enhancers	Fetal Heart	heart
8	chr14:65318800-65320400	Enhancers	Left Ventricle	heart
9	chr14:65318800-65320600	Enhancers	K562	blood
10	chr14:65319000-65320400	Enhancers	Right Ventricle	heart
11	chr14:65319000-65320600	Enhancers	Skeletal Muscle Female	skeletal muscle

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