Variant report

Variant	rs1274137
Chromosome Location	chr10:91699702-91699703
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10785927	1.00[ASN][1000 genomes]
rs10785930	1.00[ASN][1000 genomes]
rs10881718	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1111716	1.00[ASN][1000 genomes]
rs1113984	1.00[ASN][1000 genomes]
rs11185944	1.00[ASN][1000 genomes]
rs1274129	1.00[ASN][1000 genomes]
rs1274131	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1274132	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1274135	1.00[ASN][1000 genomes]
rs1274139	1.00[ASN][1000 genomes]
rs1274140	1.00[ASN][1000 genomes]
rs1274141	1.00[ASN][1000 genomes]
rs1274142	1.00[ASN][1000 genomes]
rs1274172	1.00[ASN][1000 genomes]
rs1274174	1.00[ASN][1000 genomes]
rs1274177	1.00[ASN][1000 genomes]
rs1296513	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1343365	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1555825	1.00[ASN][1000 genomes]
rs1748492	1.00[ASN][1000 genomes]
rs1748493	1.00[ASN][1000 genomes]
rs1748495	1.00[ASN][1000 genomes]
rs1777954	1.00[ASN][1000 genomes]
rs1777955	1.00[ASN][1000 genomes]
rs1954410	1.00[ASN][1000 genomes]
rs2419351	1.00[ASN][1000 genomes]
rs2763324	1.00[ASN][1000 genomes]
rs2763333	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2798613	1.00[ASN][1000 genomes]
rs2798620	1.00[ASN][1000 genomes]
rs4288675	1.00[ASN][1000 genomes]
rs4301707	1.00[ASN][1000 genomes]
rs4933167	1.00[CHB][hapmap]
rs4933534	1.00[ASN][1000 genomes]
rs6583667	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6583671	1.00[ASN][1000 genomes]
rs67801980	1.00[ASN][1000 genomes]
rs67876331	1.00[ASN][1000 genomes]
rs7092902	1.00[ASN][1000 genomes]
rs7094046	1.00[ASN][1000 genomes]
rs72820721	1.00[ASN][1000 genomes]
rs72820722	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869080	chr10:91498641-91712834	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1043571	chr10:91568555-92036154	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv551874	chr10:91570211-92036154	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv949678	chr10:91589048-92016474	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv895883	chr10:91610601-92195828	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv1039731	chr10:91645718-92198264	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv540743	chr10:91645718-92198264	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv467430	chr10:91681344-92297943	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv551875	chr10:91681344-92297943	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1274137	CYP26C1	cis	parietal	SCAN
rs1274137	TNKS2	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91697200-91700400	Enhancers	NHEK	skin
2	chr10:91697600-91699800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:91698200-91702000	Weak transcription	Primary B cells from cord blood	blood
4	chr10:91698400-91702200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:91698600-91701000	Enhancers	HMEC	breast
6	chr10:91698800-91699800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:91698800-91699800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:91699600-91700400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:91699600-91700400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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