Variant report
Variant | rs10785927 |
---|---|
Chromosome Location | chr10:91760774-91760775 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10736052 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10785930 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10881718 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[ASN][1000 genomes] |
rs1111716 | 1.00[ASN][1000 genomes] |
rs1113984 | 1.00[ASN][1000 genomes] |
rs11185944 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs12247437 | 0.84[EUR][1000 genomes] |
rs1274129 | 1.00[ASN][1000 genomes] |
rs1274131 | 1.00[ASN][1000 genomes] |
rs1274132 | 1.00[ASN][1000 genomes] |
rs1274135 | 1.00[ASN][1000 genomes] |
rs1274137 | 1.00[ASN][1000 genomes] |
rs1274139 | 1.00[ASN][1000 genomes] |
rs1274140 | 1.00[ASN][1000 genomes] |
rs1274141 | 1.00[ASN][1000 genomes] |
rs1274142 | 1.00[ASN][1000 genomes] |
rs1274172 | 0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1274174 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1274177 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1296513 | 1.00[ASN][1000 genomes] |
rs1343365 | 1.00[ASN][1000 genomes] |
rs1555825 | 1.00[ASN][1000 genomes] |
rs1748492 | 1.00[ASN][1000 genomes] |
rs1748493 | 1.00[ASN][1000 genomes] |
rs1748495 | 1.00[ASN][1000 genomes] |
rs1777954 | 1.00[ASN][1000 genomes] |
rs1777955 | 1.00[ASN][1000 genomes] |
rs1954410 | 1.00[ASN][1000 genomes] |
rs2419344 | 0.84[EUR][1000 genomes] |
rs2419351 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2763324 | 1.00[ASN][1000 genomes] |
rs2763333 | 1.00[ASN][1000 genomes] |
rs2798613 | 1.00[ASN][1000 genomes] |
rs2798620 | 1.00[ASN][1000 genomes] |
rs2798621 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs4288675 | 1.00[ASN][1000 genomes] |
rs4301707 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs4933167 | 1.00[CHB][hapmap] |
rs4933534 | 1.00[ASN][1000 genomes] |
rs6583667 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs6583671 | 1.00[ASN][1000 genomes] |
rs67801980 | 1.00[ASN][1000 genomes] |
rs67876331 | 1.00[ASN][1000 genomes] |
rs7075020 | 0.81[EUR][1000 genomes] |
rs7092902 | 1.00[ASN][1000 genomes] |
rs7094046 | 1.00[ASN][1000 genomes] |
rs72820721 | 1.00[ASN][1000 genomes] |
rs72820722 | 1.00[ASN][1000 genomes] |
rs7901192 | 0.84[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1043571 | chr10:91568555-92036154 | Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
2 | nsv551874 | chr10:91570211-92036154 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
3 | nsv949678 | chr10:91589048-92016474 | Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
4 | nsv895883 | chr10:91610601-92195828 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
5 | nsv1039731 | chr10:91645718-92198264 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
6 | nsv540743 | chr10:91645718-92198264 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
7 | nsv467430 | chr10:91681344-92297943 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
8 | nsv551875 | chr10:91681344-92297943 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
9 | nsv551877 | chr10:91744865-91776003 | Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
10 | esv3451869 | chr10:91760703-91760862 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:91760000-91761000 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
2 | chr10:91760400-91761000 | Enhancers | Ganglion Eminence derived primary cultured neurospheres | brain |
3 | chr10:91760600-91760800 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
4 | chr10:91760600-91761400 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |