Variant report

Variant	rs12742104
Chromosome Location	chr1:165334349-165334350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs12405384	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12408881	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12748775	1.00[AFR][1000 genomes]
rs1330389	1.00[AFR][1000 genomes]
rs34861550	1.00[AFR][1000 genomes]
rs35507667	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35687433	1.00[AFR][1000 genomes]
rs71628381	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165333600-165334400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:165333600-165334800	Enhancers	Hela-S3	cervix
3	chr1:165333600-165335000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:165333600-165335000	Enhancers	HMEC	breast
5	chr1:165333600-165335200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:165333600-165335200	Enhancers	NHEK	skin
7	chr1:165333800-165334400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr1:165333800-165334400	Enhancers	Ovary	ovary
9	chr1:165333800-165334600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:165333800-165334600	Enhancers	Esophagus	oesophagus
11	chr1:165333800-165334600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr1:165333800-165334800	Enhancers	Adipose Nuclei	Adipose
13	chr1:165333800-165334800	Enhancers	NHDF-Ad	bronchial
14	chr1:165333800-165335000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:165333800-165335000	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr1:165333800-165335000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr1:165333800-165335200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:165334000-165334400	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr1:165334000-165334600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:165334000-165334600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
21	chr1:165334000-165334800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:165334000-165335000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:165334000-165335000	Enhancers	Psoas Muscle	Psoas
24	chr1:165334000-165335600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr1:165334200-165334400	Bivalent Enhancer	Stomach Mucosa	stomach
26	chr1:165334200-165336200	Weak transcription	Right Atrium	heart

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