Variant report

Variant	rs1330389
Chromosome Location	chr1:165316804-165316805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12405384	1.00[AFR][1000 genomes]
rs12407278	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12408881	1.00[AFR][1000 genomes]
rs12742104	1.00[AFR][1000 genomes]
rs12748775	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17428424	0.85[ASN][1000 genomes]
rs34533308	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34861550	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35687433	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61800569	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67338345	0.82[ASN][1000 genomes]
rs71628377	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71628378	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71628381	1.00[AFR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165311400-165318800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:165315000-165318000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:165315000-165318800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:165316400-165317000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr1:165316400-165317600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:165316800-165317000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
7	chr1:165316800-165317200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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