Variant report

Variant	rs61800569
Chromosome Location	chr1:165321880-165321881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12407278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12748775	0.88[ASN][1000 genomes]
rs1330389	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17428424	0.81[ASN][1000 genomes]
rs34533308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34861550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35687433	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67338345	0.85[ASN][1000 genomes]
rs71628377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71628378	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165320400-165323200	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:165321200-165322000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
3	chr1:165321200-165322200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:165321200-165322200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
5	chr1:165321200-165322200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
6	chr1:165321200-165322400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
7	chr1:165321200-165322400	Bivalent/Poised TSS	Colonic Mucosa	Colon
8	chr1:165321200-165322400	Bivalent Enhancer	Fetal Muscle Leg	muscle
9	chr1:165321200-165322600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
10	chr1:165321200-165322600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
11	chr1:165321200-165324800	Bivalent Enhancer	Liver	Liver
12	chr1:165321200-165326400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
13	chr1:165321400-165322000	Bivalent Enhancer	Psoas Muscle	Psoas
14	chr1:165321400-165322200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:165321400-165322200	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
16	chr1:165321400-165322200	Bivalent Enhancer	Right Atrium	heart
17	chr1:165321400-165322400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:165321400-165322600	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
19	chr1:165321400-165322600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
20	chr1:165321400-165326600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
21	chr1:165321600-165322000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:165321600-165322000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:165321600-165322000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
24	chr1:165321600-165322000	Bivalent Enhancer	Brain Substantia Nigra	brain
25	chr1:165321600-165322000	Bivalent Enhancer	Colon Smooth Muscle	Colon
26	chr1:165321600-165322000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
27	chr1:165321600-165322000	Enhancers	Gastric	stomach
28	chr1:165321600-165322000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
29	chr1:165321600-165322200	Flanking Bivalent TSS/Enh	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:165321600-165322200	Bivalent Enhancer	Adipose Nuclei	Adipose
31	chr1:165321600-165322200	Bivalent Enhancer	Brain Anterior Caudate	brain
32	chr1:165321600-165322200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
33	chr1:165321600-165322200	Bivalent Enhancer	Lung	lung
34	chr1:165321600-165322200	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
35	chr1:165321600-165322200	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
36	chr1:165321600-165322200	Bivalent Enhancer	Spleen	Spleen
37	chr1:165321600-165322400	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr1:165321600-165322400	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
39	chr1:165321600-165322400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
40	chr1:165321600-165322400	Bivalent Enhancer	Left Ventricle	heart
41	chr1:165321600-165322600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr1:165321600-165322600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
43	chr1:165321600-165322600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
44	chr1:165321600-165322800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
45	chr1:165321600-165325200	Bivalent Enhancer	Fetal Stomach	stomach
46	chr1:165321600-165325400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
47	chr1:165321600-165326000	Enhancers	Pancreas	Pancrea
48	chr1:165321800-165322000	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr1:165321800-165322000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr1:165321800-165322000	Bivalent Enhancer	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links