Variant report

Variant	rs71628378
Chromosome Location	chr1:165323645-165323646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12407278	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12748775	0.87[ASN][1000 genomes]
rs1330389	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34533308	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34861550	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35687433	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61800569	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67338345	0.84[ASN][1000 genomes]
rs71628377	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165321200-165324800	Bivalent Enhancer	Liver	Liver
2	chr1:165321200-165326400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr1:165321400-165326600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
4	chr1:165321600-165325200	Bivalent Enhancer	Fetal Stomach	stomach
5	chr1:165321600-165325400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
6	chr1:165321600-165326000	Enhancers	Pancreas	Pancrea
7	chr1:165321800-165323800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:165321800-165324600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr1:165322000-165324600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:165322200-165323800	Bivalent Enhancer	Fetal Intestine Small	intestine
11	chr1:165322400-165323800	Bivalent Enhancer	Fetal Intestine Large	intestine
12	chr1:165322800-165326400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:165323000-165323800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:165323000-165324600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:165323000-165324800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
16	chr1:165323200-165323800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:165323200-165323800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:165323200-165323800	Bivalent Enhancer	Brain Substantia Nigra	brain
19	chr1:165323200-165323800	Bivalent Enhancer	Fetal Heart	heart
20	chr1:165323200-165323800	Bivalent Enhancer	Lung	lung
21	chr1:165323200-165324000	Bivalent/Poised TSS	Right Ventricle	heart
22	chr1:165323200-165324200	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr1:165323200-165325000	Bivalent Enhancer	Fetal Muscle Leg	muscle
24	chr1:165323200-165325000	Bivalent Enhancer	HUVEC	blood vessel
25	chr1:165323200-165325400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
26	chr1:165323200-165325600	Bivalent Enhancer	Left Ventricle	heart
27	chr1:165323200-165326000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr1:165323400-165323800	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr1:165323400-165323800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
30	chr1:165323400-165323800	Active TSS	Right Atrium	heart
31	chr1:165323400-165323800	Bivalent Enhancer	NHEK	skin
32	chr1:165323400-165324000	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
33	chr1:165323400-165324000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:165323400-165324600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
35	chr1:165323400-165324600	Bivalent Enhancer	Brain Germinal Matrix	brain
36	chr1:165323400-165325200	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr1:165323400-165326000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr1:165323400-165326200	Bivalent Enhancer	Fetal Brain Male	brain
39	chr1:165323400-165326400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
40	chr1:165323600-165323800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
41	chr1:165323600-165323800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
42	chr1:165323600-165323800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
43	chr1:165323600-165323800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr1:165323600-165323800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr1:165323600-165323800	Bivalent Enhancer	Adipose Nuclei	Adipose
46	chr1:165323600-165323800	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
47	chr1:165323600-165323800	Bivalent Enhancer	Fetal Lung	lung
48	chr1:165323600-165323800	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
49	chr1:165323600-165324000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
50	chr1:165323600-165324000	Bivalent Enhancer	Placenta	Placenta

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