Variant report

Variant	rs12407278
Chromosome Location	chr1:165321030-165321031
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12748775	0.88[ASN][1000 genomes]
rs1330389	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17428424	0.81[ASN][1000 genomes]
rs34533308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34861550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35687433	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61800569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67338345	0.85[ASN][1000 genomes]
rs71628377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71628378	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165318400-165321200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:165319600-165321200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
3	chr1:165319600-165321400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
4	chr1:165320400-165321200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr1:165320400-165323200	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:165320600-165321200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
7	chr1:165320600-165321200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
8	chr1:165320600-165321200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
9	chr1:165320800-165321200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
10	chr1:165320800-165321400	Bivalent Enhancer	Fetal Intestine Large	intestine
11	chr1:165320800-165321600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:165321000-165321200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
13	chr1:165321000-165321400	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
14	chr1:165321000-165321600	Bivalent Enhancer	Fetal Brain Male	brain
15	chr1:165321000-165321600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr1:165321000-165321800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr1:165321000-165321800	Bivalent Enhancer	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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