Variant report

Variant	rs71628377
Chromosome Location	chr1:165322733-165322734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12407278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12748775	0.88[ASN][1000 genomes]
rs1330389	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17428424	0.81[ASN][1000 genomes]
rs34533308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34861550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35687433	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61800569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67338345	0.85[ASN][1000 genomes]
rs71628378	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165320400-165323200	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:165321200-165324800	Bivalent Enhancer	Liver	Liver
3	chr1:165321200-165326400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr1:165321400-165326600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
5	chr1:165321600-165322800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr1:165321600-165325200	Bivalent Enhancer	Fetal Stomach	stomach
7	chr1:165321600-165325400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
8	chr1:165321600-165326000	Enhancers	Pancreas	Pancrea
9	chr1:165321800-165322800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr1:165321800-165322800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:165321800-165323800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:165321800-165324600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr1:165322000-165322800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
14	chr1:165322000-165324600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:165322200-165322800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr1:165322200-165323400	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
17	chr1:165322200-165323800	Bivalent Enhancer	Fetal Intestine Small	intestine
18	chr1:165322400-165322800	Bivalent Enhancer	Fetal Brain Female	brain
19	chr1:165322400-165323000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
20	chr1:165322400-165323000	Bivalent Enhancer	Fetal Heart	heart
21	chr1:165322400-165323600	Bivalent Enhancer	Colonic Mucosa	Colon
22	chr1:165322400-165323800	Bivalent Enhancer	Fetal Intestine Large	intestine
23	chr1:165322600-165322800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
24	chr1:165322600-165322800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
25	chr1:165322600-165322800	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr1:165322600-165323000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
27	chr1:165322600-165323000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
28	chr1:165322600-165323200	Bivalent Enhancer	Duodenum Mucosa	Duodenum
29	chr1:165322600-165323200	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
30	chr1:165322600-165323400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell

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