Variant report

Variant	rs12745502
Chromosome Location	chr1:56092081-56092082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11206632	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11577328	0.91[EUR][1000 genomes]
rs11579149	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11580805	0.82[ASN][1000 genomes]
rs11583011	0.92[EUR][1000 genomes]
rs11585079	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12741461	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12747893	0.90[EUR][1000 genomes]
rs12751953	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35120401	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35662474	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57914877	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61552741	0.83[ASN][1000 genomes]
rs6669312	0.83[ASN][1000 genomes]
rs72912611	0.87[ASN][1000 genomes]
rs72912615	0.87[ASN][1000 genomes]
rs72912622	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461617	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv546303	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1014866	chr1:56059054-56129092	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56089000-56104000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56089400-56092400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:56090400-56092200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:56090600-56098000	Weak transcription	Fetal Lung	lung
5	chr1:56091400-56092800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:56091600-56092200	Enhancers	Fetal Kidney	kidney
7	chr1:56091600-56092600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:56091800-56092400	Enhancers	Hela-S3	cervix
9	chr1:56092000-56092400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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