Variant report

Variant	rs72912615
Chromosome Location	chr1:56099492-56099493
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11580805	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11585079	0.83[ASN][1000 genomes]
rs12745502	0.87[ASN][1000 genomes]
rs12751953	0.83[ASN][1000 genomes]
rs17112591	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35662474	0.81[ASN][1000 genomes]
rs57914877	0.81[ASN][1000 genomes]
rs61552741	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6669312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72912611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72912622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461617	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv546303	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1014866	chr1:56059054-56129092	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56089000-56104000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56096000-56103400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:56096800-56102800	Enhancers	Osteobl	bone
4	chr1:56097000-56099600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:56097000-56103000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:56097000-56103400	Enhancers	NHDF-Ad	bronchial
7	chr1:56097600-56099600	Weak transcription	Aorta	Aorta
8	chr1:56097600-56100600	Weak transcription	Right Atrium	heart
9	chr1:56098000-56099600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:56098000-56101200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:56098000-56101800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:56098200-56100200	Weak transcription	A549	lung
13	chr1:56098400-56102200	Enhancers	NHLF	lung
14	chr1:56098600-56099800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:56098600-56100800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr1:56098800-56105800	Weak transcription	Fetal Stomach	stomach
17	chr1:56099000-56100200	Weak transcription	Psoas Muscle	Psoas
18	chr1:56099000-56105200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:56099000-56106600	Weak transcription	Ovary	ovary
20	chr1:56099200-56100200	Weak transcription	HMEC	breast
21	chr1:56099200-56100400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr1:56099200-56100600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:56099200-56100800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:56099200-56100800	Enhancers	Hela-S3	cervix
25	chr1:56099200-56105800	Weak transcription	Fetal Kidney	kidney
26	chr1:56099400-56100200	Weak transcription	Fetal Lung	lung
27	chr1:56099400-56101600	Weak transcription	Placenta Amnion	Placenta Amnion

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