Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1008809	0.83[CHD][hapmap];0.91[JPT][hapmap]
rs10493968	0.91[JPT][hapmap]
rs10493969	0.91[JPT][hapmap]
rs10874527	0.81[ASN][1000 genomes]
rs11164323	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11809591	0.96[ASN][1000 genomes]
rs1999795	0.82[ASN][1000 genomes]
rs2000149	0.83[CHD][hapmap];0.91[JPT][hapmap]
rs2000150	0.83[CHD][hapmap];0.90[JPT][hapmap]
rs2211297	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap]
rs2879348	0.90[JPT][hapmap]
rs3748653	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4908198	0.83[CHD][hapmap];0.95[JPT][hapmap]
rs4908200	0.95[JPT][hapmap]
rs6577281	0.85[ASN][1000 genomes]
rs6662872	0.91[JPT][hapmap]
rs728323	0.84[ASN][1000 genomes]
rs7524443	0.90[JPT][hapmap]
rs7526689	0.95[JPT][hapmap]
rs7531673	0.83[CHD][hapmap];0.91[JPT][hapmap]
rs943556	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522921	chr1:102170295-102876392	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv522156	chr1:102309649-102421714	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1004240	chr1:102360610-102428344	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1012856	chr1:102360610-102438432	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12748614	OLFM3	cis	cerebellum	SCAN
rs12748614	AMY2B	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102363800-102364800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:102364400-102365200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr1:102364600-102365000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr1:102364600-102365200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:102364600-102365200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:102364600-102365200	Enhancers	HUES48 Cell Line	embryonic stem cell

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