Variant report

Variant	rs2211297
Chromosome Location	chr1:102357537-102357538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1008809	0.91[JPT][hapmap]
rs10493968	0.91[JPT][hapmap]
rs10493969	0.91[JPT][hapmap]
rs11164323	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11809591	0.96[ASN][1000 genomes]
rs12748614	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1999795	0.81[ASN][1000 genomes]
rs2000149	0.91[JPT][hapmap]
rs2000150	0.90[JPT][hapmap]
rs2879348	0.90[JPT][hapmap]
rs3748653	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4908198	0.95[JPT][hapmap]
rs4908200	0.95[JPT][hapmap]
rs6577281	0.84[ASN][1000 genomes]
rs6662872	0.91[JPT][hapmap]
rs728323	0.82[ASN][1000 genomes]
rs7524443	0.90[JPT][hapmap]
rs7526689	0.95[JPT][hapmap]
rs7531673	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522921	chr1:102170295-102876392	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv522156	chr1:102309649-102421714	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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