Variant report

Variant	rs1275286
Chromosome Location	chr10:59063172-59063173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10826015	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259466	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12413641	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12413683	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12414044	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12415435	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12415763	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12416638	1.00[ASN][1000 genomes]
rs1275283	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1275285	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16910475	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16910529	1.00[ASN][1000 genomes]
rs1717524	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2127616	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2127618	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2928413	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2928414	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2928429	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2928463	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2928464	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2928465	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2928466	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2928467	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3008786	0.89[EUR][1000 genomes]
rs6481269	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7073642	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092297	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095614	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73299308	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895543	chr10:58938552-59210800	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv895544	chr10:58938552-59282980	Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv895545	chr10:58938552-59313872	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916857	chr10:58960110-59272160	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:59062000-59065000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:59062600-59066200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr10:59063000-59063400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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