Variant report

Variant	rs3008786
Chromosome Location	chr10:59155761-59155762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10826015	0.89[EUR][1000 genomes]
rs12259466	0.84[EUR][1000 genomes]
rs12413641	0.85[AMR][1000 genomes]
rs12413683	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12414044	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12415435	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12415763	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12416638	0.84[EUR][1000 genomes]
rs1275283	0.84[EUR][1000 genomes]
rs1275285	0.84[EUR][1000 genomes]
rs1275286	0.89[EUR][1000 genomes]
rs16910475	0.84[EUR][1000 genomes]
rs16910529	0.84[EUR][1000 genomes]
rs1904765	0.83[ASN][1000 genomes]
rs2127616	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2127618	0.85[AMR][1000 genomes]
rs2928413	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2928414	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2928429	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2928461	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2928463	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2928464	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2928465	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2928466	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2928467	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3008787	0.84[ASN][1000 genomes]
rs3008788	0.81[ASN][1000 genomes]
rs3008789	0.84[ASN][1000 genomes]
rs3008790	0.83[ASN][1000 genomes]
rs6481269	0.84[EUR][1000 genomes]
rs7073642	0.89[EUR][1000 genomes]
rs7092297	0.89[EUR][1000 genomes]
rs7095614	0.84[EUR][1000 genomes]
rs73299308	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895543	chr10:58938552-59210800	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv895544	chr10:58938552-59282980	Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv895545	chr10:58938552-59313872	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916857	chr10:58960110-59272160	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1038755	chr10:59071887-59161413	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv895546	chr10:59085846-59236627	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv895547	chr10:59122829-59187788	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:59155600-59156000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr10:59155600-59156000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr10:59155600-59156200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:59155600-59156400	Enhancers	Cortex derived primary cultured neurospheres	brain

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