Variant report

Variant	rs12753569
Chromosome Location	chr1:76484014-76484015
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1013629	0.84[EUR][1000 genomes]
rs1013630	0.83[EUR][1000 genomes]
rs10430051	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1251490	0.83[EUR][1000 genomes]
rs1340689	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs1856835	0.88[EUR][1000 genomes]
rs3179693	0.81[ASN][1000 genomes]
rs4381138	0.86[EUR][1000 genomes]
rs61771304	0.85[EUR][1000 genomes]
rs6593523	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6668566	0.87[EUR][1000 genomes]
rs6676370	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6696116	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6703034	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Personality dimensions	20691247	GWAS catalog

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76479800-76484200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:76484000-76484400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr1:76484000-76484600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:76484000-76484800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:76484000-76485000	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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