Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ST6GALNAC3-2	chr1:76484819-76485041	ENSG00000225605

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10493577	0.89[EUR][1000 genomes]
rs10873864	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11162069	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11811937	0.81[ASN][1000 genomes]
rs1251497	0.80[EUR][1000 genomes]
rs1251523	0.92[EUR][1000 genomes]
rs1251524	0.92[EUR][1000 genomes]
rs1251525	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1251527	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12753569	0.81[ASN][1000 genomes]
rs12756159	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1340688	0.81[EUR][1000 genomes]
rs1370715	0.84[EUR][1000 genomes]
rs17097922	0.89[EUR][1000 genomes]
rs17097929	0.89[EUR][1000 genomes]
rs17097968	0.84[EUR][1000 genomes]
rs17097983	0.84[EUR][1000 genomes]
rs1866254	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1934817	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2118530	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2153544	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61771293	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6593523	0.81[ASN][1000 genomes]
rs6672844	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6703034	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7533088	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76484000-76485000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr1:76484600-76489400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:76484800-76487400	Weak transcription	Fetal Lung	lung
4	chr1:76484800-76489600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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