Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10493577	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10873864	0.91[EUR][1000 genomes]
rs11162069	0.91[EUR][1000 genomes]
rs11808413	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1251493	0.84[EUR][1000 genomes]
rs1251497	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1251523	0.97[EUR][1000 genomes]
rs1251524	0.97[EUR][1000 genomes]
rs1251525	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1251527	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12756159	0.91[EUR][1000 genomes]
rs1340688	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1370715	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17097922	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17097929	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17097968	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17097983	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17097997	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1866254	0.91[EUR][1000 genomes]
rs1934815	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1934817	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2118530	0.91[EUR][1000 genomes]
rs2153544	0.91[EUR][1000 genomes]
rs3179693	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6672844	0.91[EUR][1000 genomes]
rs6703034	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7533088	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76484600-76489400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:76484800-76487400	Weak transcription	Fetal Lung	lung
3	chr1:76484800-76489600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:76485000-76488400	Weak transcription	Placenta Amnion	Placenta Amnion

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