Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1013630	0.86[AFR][1000 genomes]
rs10493577	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1251472	0.86[ASN][1000 genomes]
rs1251493	0.80[EUR][1000 genomes]
rs1251497	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1251523	0.83[EUR][1000 genomes]
rs1251524	0.83[EUR][1000 genomes]
rs1251525	0.83[EUR][1000 genomes]
rs1251527	0.83[EUR][1000 genomes]
rs1340688	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340689	0.86[AFR][1000 genomes]
rs1370715	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097922	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097929	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097968	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097983	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097997	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1856835	0.83[AFR][1000 genomes]
rs1934815	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs291074	0.86[ASN][1000 genomes]
rs4381138	0.83[AFR][1000 genomes]
rs58963591	0.83[ASN][1000 genomes]
rs61771293	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6668566	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2754129	chr1:76489579-76529279	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv870968	chr1:76490234-76552475	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76503600-76509600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:76504000-76509200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:76506400-76514000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:76506600-76514000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:76507400-76509600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:76507600-76513600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:76507800-76513800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:76507800-76514000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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