Variant report

Variant	rs17097997
Chromosome Location	chr1:76510789-76510790
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1013630	0.91[AFR][1000 genomes]
rs10493577	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11803060	1.00[CHB][hapmap]
rs11803647	1.00[CHB][hapmap]
rs11808413	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1251472	0.86[ASN][1000 genomes]
rs1251493	0.91[EUR][1000 genomes]
rs1251497	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1251498	0.82[EUR][1000 genomes]
rs1251523	0.85[EUR][1000 genomes]
rs1251524	0.85[EUR][1000 genomes]
rs1251525	0.85[EUR][1000 genomes]
rs1251527	0.85[EUR][1000 genomes]
rs1340688	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340689	0.95[YRI][hapmap];0.91[AFR][1000 genomes]
rs1370715	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097922	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097929	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097968	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097983	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098064	1.00[CHB][hapmap]
rs1856835	0.89[AFR][1000 genomes]
rs1890968	1.00[CHB][hapmap]
rs1934815	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs291074	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs4381138	0.89[AFR][1000 genomes]
rs58963591	0.83[ASN][1000 genomes]
rs61771293	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61771304	0.82[AFR][1000 genomes]
rs6668566	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2754129	chr1:76489579-76529279	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv870968	chr1:76490234-76552475	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76506400-76514000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:76506600-76514000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:76507600-76513600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:76507800-76513800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:76507800-76514000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:76509800-76514000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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