Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10493577	0.84[EUR][1000 genomes]
rs10873864	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162069	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1144344	1.00[CHD][hapmap]
rs11808413	0.80[EUR][1000 genomes]
rs1251497	0.97[EUR][1000 genomes]
rs1251498	0.84[EUR][1000 genomes]
rs1251523	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1251524	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1251525	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1251527	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12756159	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340688	0.96[EUR][1000 genomes]
rs1370715	0.85[EUR][1000 genomes]
rs17097922	0.85[EUR][1000 genomes]
rs17097929	0.84[EUR][1000 genomes]
rs17097968	0.85[EUR][1000 genomes]
rs17097983	0.85[EUR][1000 genomes]
rs17097997	0.91[EUR][1000 genomes]
rs1866254	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1934815	0.91[EUR][1000 genomes]
rs1934817	0.81[EUR][1000 genomes]
rs2118530	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153544	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5745520	1.00[JPT][hapmap]
rs61771293	0.84[EUR][1000 genomes]
rs6672844	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6703034	0.81[EUR][1000 genomes]
rs7533088	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2754129	chr1:76489579-76529279	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv870968	chr1:76490234-76552475	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv947186	chr1:76512447-76530843	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1477	chr1:76515963-76534339	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76514200-76518600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:76514400-76518600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:76515000-76518600	Weak transcription	Fetal Lung	lung
4	chr1:76515200-76518200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:76515200-76518200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:76515200-76519000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:76515400-76518400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr1:76515400-76518600	Weak transcription	Fetal Brain Male	brain
9	chr1:76517200-76518400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr1:76517200-76519000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:76517600-76521400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:76517800-76519200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:76517800-76519400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr1:76517800-76520000	Enhancers	Fetal Stomach	stomach
15	chr1:76518000-76519000	Enhancers	Brain Cingulate Gyrus	brain
16	chr1:76518000-76519400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr1:76518000-76519400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr1:76518000-76520200	Enhancers	Colon Smooth Muscle	Colon

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