Variant report

Variant	rs17097922
Chromosome Location	chr1:76490425-76490426
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1013630	0.84[AFR][1000 genomes]
rs10493577	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873864	0.90[EUR][1000 genomes]
rs11162069	0.90[EUR][1000 genomes]
rs11803060	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11803647	1.00[CHB][hapmap]
rs11808413	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11811937	0.81[AFR][1000 genomes]
rs1251472	0.86[ASN][1000 genomes]
rs1251493	0.85[EUR][1000 genomes]
rs1251497	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1251523	0.96[EUR][1000 genomes]
rs1251524	0.96[EUR][1000 genomes]
rs1251525	0.96[EUR][1000 genomes]
rs1251527	0.96[EUR][1000 genomes]
rs12756159	0.90[EUR][1000 genomes]
rs1340688	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340689	0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs1370715	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097929	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097968	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097983	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097997	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098064	1.00[CHB][hapmap]
rs1856835	0.81[AFR][1000 genomes]
rs1866254	0.90[EUR][1000 genomes]
rs1890968	1.00[CHB][hapmap]
rs1934815	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1934817	0.90[EUR][1000 genomes]
rs2118530	0.90[EUR][1000 genomes]
rs2153544	0.90[EUR][1000 genomes]
rs2631781	1.00[JPT][hapmap]
rs291074	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs3011987	1.00[JPT][hapmap]
rs3179693	0.89[EUR][1000 genomes]
rs4381138	0.81[AFR][1000 genomes]
rs58963591	0.83[ASN][1000 genomes]
rs61771293	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6668566	0.81[AFR][1000 genomes]
rs6672844	0.90[EUR][1000 genomes]
rs6703034	0.90[EUR][1000 genomes]
rs7533088	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2754129	chr1:76489579-76529279	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv870968	chr1:76490234-76552475	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76487400-76491000	Enhancers	Fetal Lung	lung
2	chr1:76488200-76491800	Enhancers	Primary T cells from cord blood	blood
3	chr1:76488800-76490600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:76489000-76490600	Enhancers	NHEK	skin
5	chr1:76489200-76490600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr1:76489200-76490600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:76489200-76490800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr1:76489200-76490800	Enhancers	HMEC	breast
9	chr1:76489400-76490600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:76489400-76490800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:76489400-76490800	Enhancers	Fetal Heart	heart
12	chr1:76489600-76491200	Enhancers	Fetal Stomach	stomach
13	chr1:76489800-76490600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:76489800-76491000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr1:76489800-76491000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr1:76489800-76502800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr1:76490200-76490600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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