Variant report

Variant	rs10493577
Chromosome Location	chr1:76489223-76489224
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10873864	0.91[EUR][1000 genomes]
rs11162069	0.91[EUR][1000 genomes]
rs11803060	1.00[CHB][hapmap]
rs11803647	1.00[CHB][hapmap]
rs11808413	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1251472	0.86[ASN][1000 genomes]
rs1251493	0.84[EUR][1000 genomes]
rs1251497	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1251523	0.97[EUR][1000 genomes]
rs1251524	0.97[EUR][1000 genomes]
rs1251525	0.97[EUR][1000 genomes]
rs1251527	0.97[EUR][1000 genomes]
rs12756159	0.91[EUR][1000 genomes]
rs1340688	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340689	0.95[YRI][hapmap]
rs1370715	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097922	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097929	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097968	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097983	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17097997	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098064	1.00[CHB][hapmap]
rs1866254	0.91[EUR][1000 genomes]
rs1890968	1.00[CHB][hapmap]
rs1934815	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1934817	0.91[EUR][1000 genomes]
rs2118530	0.91[EUR][1000 genomes]
rs2153544	0.91[EUR][1000 genomes]
rs291074	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs3179693	0.89[EUR][1000 genomes]
rs58963591	0.83[ASN][1000 genomes]
rs61771293	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6672844	0.91[EUR][1000 genomes]
rs6703034	0.91[EUR][1000 genomes]
rs7533088	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76484600-76489400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:76484800-76489600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:76487400-76491000	Enhancers	Fetal Lung	lung
4	chr1:76488200-76491800	Enhancers	Primary T cells from cord blood	blood
5	chr1:76488400-76490400	Enhancers	Placenta Amnion	Placenta Amnion
6	chr1:76488600-76490200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:76488600-76490400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:76488800-76490600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:76489000-76490000	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr1:76489000-76490400	Enhancers	Primary hematopoietic stem cells	blood
11	chr1:76489000-76490600	Enhancers	NHEK	skin
12	chr1:76489200-76490200	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr1:76489200-76490400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:76489200-76490600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr1:76489200-76490600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:76489200-76490800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr1:76489200-76490800	Enhancers	HMEC	breast

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