Variant report

Variant	rs12760011
Chromosome Location	chr1:246429058-246429059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 234 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:180)

rs_ID	r²[population]
rs10733108	0.95[JPT][hapmap]
rs10737785	0.95[JPT][hapmap]
rs10737787	0.95[JPT][hapmap]
rs10737788	0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10754499	0.87[AFR][1000 genomes]
rs10754500	0.87[AFR][1000 genomes]
rs10754501	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10754502	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10754503	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10802344	0.95[JPT][hapmap]
rs10802348	0.95[JPT][hapmap]
rs10802349	0.95[JPT][hapmap]
rs10802361	0.87[AFR][1000 genomes]
rs10802362	0.87[AFR][1000 genomes]
rs10802364	0.87[AFR][1000 genomes]
rs10802365	0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10802369	0.89[AFR][1000 genomes]
rs10802370	0.89[AFR][1000 genomes]
rs10802371	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10802373	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10802374	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10802375	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10802378	0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs10924539	0.95[JPT][hapmap]
rs10924555	0.95[JPT][hapmap]
rs10924556	0.95[JPT][hapmap]
rs10924564	0.95[JPT][hapmap]
rs10924574	0.92[ASW][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.93[YRI][hapmap]
rs10924577	0.92[ASW][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];1.00[YRI][hapmap]
rs10924579	0.92[ASW][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];1.00[YRI][hapmap]
rs10924580	0.91[YRI][hapmap]
rs10924581	0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10924583	0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10924584	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10924587	0.85[AFR][1000 genomes]
rs10924596	0.84[AFR][1000 genomes]
rs10924597	0.87[AFR][1000 genomes]
rs10924598	0.87[AFR][1000 genomes]
rs10924611	0.95[JPT][hapmap]
rs10924612	0.89[AFR][1000 genomes]
rs10924613	0.89[AFR][1000 genomes]
rs10924615	0.89[AFR][1000 genomes]
rs10924617	0.89[AFR][1000 genomes]
rs10924618	0.89[AFR][1000 genomes]
rs10924619	0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10924620	0.89[AFR][1000 genomes]
rs10924622	0.89[AFR][1000 genomes]
rs10924623	0.89[AFR][1000 genomes]
rs10924624	0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10924625	0.91[ASW][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10924632	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10924633	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10924634	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10924635	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10924636	0.89[ASN][1000 genomes]
rs10924639	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10924641	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10924643	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10924644	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10924651	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10924652	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10924654	0.85[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10924657	0.81[AFR][1000 genomes]
rs10924689	0.86[YRI][hapmap]
rs1113269	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12029350	0.84[YRI][hapmap];0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12033044	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12033048	0.83[ASW][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.88[YRI][hapmap];0.84[ASN][1000 genomes]
rs12034523	0.85[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12035348	0.85[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12036200	0.84[AFR][1000 genomes]
rs12043226	0.95[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12057323	0.89[AFR][1000 genomes]
rs12069072	0.95[JPT][hapmap]
rs12069738	0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs12073337	0.88[YRI][hapmap]
rs12089376	0.95[JPT][hapmap]
rs12093226	0.89[AFR][1000 genomes]
rs12117700	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12119839	0.85[AFR][1000 genomes]
rs12121062	0.89[AFR][1000 genomes]
rs12124001	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12124946	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12130070	0.95[JPT][hapmap]
rs12130852	0.89[AFR][1000 genomes]
rs12131185	0.81[JPT][hapmap]
rs12131333	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12131455	0.95[JPT][hapmap]
rs12135713	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12136593	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12138703	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12138738	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12140567	0.92[ASW][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs12144664	0.87[AFR][1000 genomes]
rs12145702	0.89[AFR][1000 genomes]
rs12401483	0.81[AFR][1000 genomes]
rs12401510	0.89[AFR][1000 genomes]
rs12402387	0.88[AFR][1000 genomes]
rs12402816	0.89[AFR][1000 genomes]
rs12402817	0.89[AFR][1000 genomes]
rs12403325	0.89[AFR][1000 genomes]
rs12404014	0.89[AFR][1000 genomes]
rs12406081	0.88[AFR][1000 genomes]
rs12411127	0.88[AFR][1000 genomes]
rs1361409	0.95[JPT][hapmap]
rs1578246	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1578247	0.92[ASW][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1578248	0.89[ASN][1000 genomes]
rs1630253	0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1770006	0.89[ASN][1000 genomes]
rs1770009	0.89[ASN][1000 genomes]
rs1770011	0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1780791	0.89[ASN][1000 genomes]
rs1780793	0.89[ASN][1000 genomes]
rs1780810	0.95[JPT][hapmap]
rs1780819	0.87[ASN][1000 genomes]
rs1780824	0.87[ASN][1000 genomes]
rs1892212	0.95[JPT][hapmap]
rs1934538	0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2489738	0.85[ASN][1000 genomes]
rs2791298	0.89[ASN][1000 genomes]
rs2801047	0.89[ASN][1000 genomes]
rs2878076	0.92[ASW][hapmap];0.95[JPT][hapmap];0.80[LWK][hapmap];0.82[MEX][hapmap];1.00[YRI][hapmap]
rs2878079	0.95[JPT][hapmap]
rs4330890	0.95[JPT][hapmap];1.00[YRI][hapmap]
rs4348690	0.86[LWK][hapmap];0.88[YRI][hapmap]
rs4421561	0.88[YRI][hapmap]
rs4598462	0.87[YRI][hapmap]
rs4636424	0.95[JPT][hapmap];1.00[YRI][hapmap]
rs4654096	0.92[ASW][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];0.82[MEX][hapmap];1.00[YRI][hapmap]
rs4654225	0.89[AFR][1000 genomes]
rs5021681	0.95[JPT][hapmap]
rs5021683	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs55731122	0.87[AFR][1000 genomes]
rs55756416	0.87[AFR][1000 genomes]
rs55886501	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs55972545	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs56149956	0.87[AFR][1000 genomes]
rs56157160	0.87[AFR][1000 genomes]
rs56277503	0.87[AFR][1000 genomes]
rs56408886	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs58471606	0.85[AFR][1000 genomes]
rs58793014	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs59056824	0.85[AFR][1000 genomes]
rs59417715	0.87[AFR][1000 genomes]
rs60410010	0.87[AFR][1000 genomes]
rs60684295	0.84[AFR][1000 genomes]
rs61285288	0.87[AFR][1000 genomes]
rs6426288	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6658146	0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6658269	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6659230	0.86[LWK][hapmap];0.88[YRI][hapmap]
rs6663372	0.95[JPT][hapmap]
rs6664781	0.95[JPT][hapmap]
rs6669604	0.95[JPT][hapmap]
rs6675598	0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6683238	0.89[AFR][1000 genomes]
rs6685894	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6686262	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6695050	0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6695677	0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6696588	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6700221	0.87[ASN][1000 genomes]
rs6700636	0.89[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6701875	0.89[ASN][1000 genomes]
rs6703420	0.86[ASN][1000 genomes]
rs72774483	0.87[AFR][1000 genomes]
rs72774484	0.87[AFR][1000 genomes]
rs72774485	0.87[AFR][1000 genomes]
rs72774488	0.87[AFR][1000 genomes]
rs72776317	0.89[AFR][1000 genomes]
rs72776334	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7417739	0.95[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7526997	0.88[YRI][hapmap]
rs7531070	0.95[JPT][hapmap];0.82[MEX][hapmap]
rs7533584	0.81[YRI][hapmap]
rs7535586	0.88[YRI][hapmap]
rs7539358	0.95[JPT][hapmap]
rs950820	0.84[YRI][hapmap]
rs9645318	0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:54 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497871	chr1:245706209-246655353	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv534412	chr1:245747724-246655416	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003594	chr1:245801793-246649329	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1008786	chr1:245948622-246514454	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv535388	chr1:245948622-246514454	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1004119	chr1:245957145-246813150	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv535389	chr1:245957145-246813150	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv1014529	chr1:245957145-246817877	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv1000654	chr1:245966390-246778182	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv535392	chr1:245966390-246778182	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv868852	chr1:245969229-246811220	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
12	nsv948348	chr1:246090818-246853200	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
13	nsv1007245	chr1:246120132-246619260	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv535395	chr1:246120132-246619260	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv1001139	chr1:246120516-246548942	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv873409	chr1:246122871-246429058	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv430402	chr1:246124959-246787448	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
18	nsv497890	chr1:246143172-246778453	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
19	nsv1005310	chr1:246151590-246666101	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
20	nsv1003239	chr1:246166737-246666101	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
21	nsv535397	chr1:246166737-246666101	Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
22	nsv998930	chr1:246166737-246702012	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
23	nsv526469	chr1:246168017-246490438	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
24	nsv1005825	chr1:246174208-246688635	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
25	nsv873411	chr1:246188316-246429058	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
26	nsv916235	chr1:246194535-246606790	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
27	nsv535398	chr1:246194546-246686301	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
28	nsv1001462	chr1:246194546-246686358	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
29	nsv535399	chr1:246194546-246686358	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
30	nsv949329	chr1:246220147-246710091	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
31	nsv873412	chr1:246257416-246576661	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
32	nsv995109	chr1:246260813-246429141	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
33	nsv997542	chr1:246265590-246556626	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
34	nsv1005067	chr1:246289451-246619260	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
35	nsv1012307	chr1:246289451-246655966	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
36	nsv535403	chr1:246289451-246655966	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
37	nsv468839	chr1:246303128-246708467	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
38	nsv549528	chr1:246303128-246708467	Weak transcription Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
39	nsv533962	chr1:246321447-246501692	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
40	nsv1001496	chr1:246339647-246595982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
41	nsv1011199	chr1:246342704-246464980	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
42	nsv1010307	chr1:246364256-246548942	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
43	nsv873413	chr1:246364811-246475061	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
44	nsv1006481	chr1:246371456-246429058	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
45	nsv1005573	chr1:246378676-246740427	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
46	nsv535405	chr1:246378676-246740427	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
47	nsv549531	chr1:246406762-246681116	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
48	esv2757779	chr1:246407146-246740944	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
49	esv2759012	chr1:246407146-246740944	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
50	nsv428346	chr1:246407146-246740944	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:246423400-246509000	Weak transcription	Aorta	Aorta
2	chr1:246423600-246433000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:246425600-246430800	Weak transcription	Fetal Intestine Small	intestine
4	chr1:246426600-246430400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:246426600-246430800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:246426600-246430800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:246426800-246430800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:246426800-246431000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:246428400-246429400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:246428800-246429200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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