Variant report

Variant	rs12760939
Chromosome Location	chrY:6892302-6892303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10494456	0.91[EUR][1000 genomes]
rs10753713	0.91[EUR][1000 genomes]
rs10753714	0.91[EUR][1000 genomes]
rs10800201	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10800202	0.91[EUR][1000 genomes]
rs10918385	0.81[ASN][1000 genomes]
rs10918386	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10918387	0.91[EUR][1000 genomes]
rs10918388	0.91[EUR][1000 genomes]
rs10918401	0.88[EUR][1000 genomes]
rs10918403	0.88[EUR][1000 genomes]
rs10918405	0.89[EUR][1000 genomes]
rs10918406	0.88[EUR][1000 genomes]
rs12028067	0.91[EUR][1000 genomes]
rs12083547	0.88[EUR][1000 genomes]
rs12097110	0.86[EUR][1000 genomes]
rs12126834	0.81[ASN][1000 genomes]
rs1349526	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1349527	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1432119	0.81[ASN][1000 genomes]
rs1451600	0.88[EUR][1000 genomes]
rs1451606	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1560570	0.92[EUR][1000 genomes]
rs16856734	0.91[EUR][1000 genomes]
rs28568389	0.91[EUR][1000 genomes]
rs4147072	0.91[EUR][1000 genomes]
rs4378185	0.91[EUR][1000 genomes]
rs4391646	0.93[EUR][1000 genomes]
rs4556335	0.91[EUR][1000 genomes]
rs56132740	0.88[EUR][1000 genomes]
rs61835144	0.89[EUR][1000 genomes]
rs61835149	0.91[EUR][1000 genomes]
rs61835150	0.91[EUR][1000 genomes]
rs61835151	0.93[EUR][1000 genomes]
rs6658248	0.88[EUR][1000 genomes]
rs6658513	0.88[EUR][1000 genomes]
rs6687444	0.88[EUR][1000 genomes]
rs7552225	0.91[EUR][1000 genomes]
rs896403	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs896404	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917092	chrY:6390454-7324376	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrY:6884800-6955400	Weak transcription	Pancreas	Pancrea
2	chrY:6888000-6908000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chrY:6892000-6911000	Weak transcription	Fetal Intestine Small	intestine

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