Variant report

Variant	rs61835149
Chromosome Location	chr1:166175527-166175528
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10494453	0.81[AMR][1000 genomes]
rs10494455	0.81[AMR][1000 genomes]
rs10494456	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10753713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10753714	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10800199	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10800200	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10800201	0.94[EUR][1000 genomes]
rs10800202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10918381	0.81[ASN][1000 genomes]
rs10918383	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10918384	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10918386	0.94[EUR][1000 genomes]
rs10918387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10918388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10918401	0.93[EUR][1000 genomes]
rs10918403	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10918405	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10918406	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12023523	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12028067	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12031538	0.81[AMR][1000 genomes]
rs12083547	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12097110	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12136704	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12402371	0.81[ASN][1000 genomes]
rs12409766	0.81[ASN][1000 genomes]
rs12734750	0.81[ASN][1000 genomes]
rs12760939	0.91[EUR][1000 genomes]
rs1349526	0.92[EUR][1000 genomes]
rs1349527	0.92[EUR][1000 genomes]
rs1451600	0.93[EUR][1000 genomes]
rs1451606	0.94[EUR][1000 genomes]
rs1560570	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16856734	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1864791	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28568389	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147072	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4378185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4391646	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4556335	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4656484	0.81[ASN][1000 genomes]
rs4656485	0.82[ASN][1000 genomes]
rs56132740	0.93[EUR][1000 genomes]
rs61835144	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61835150	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61835151	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6658248	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6658513	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6687444	0.93[EUR][1000 genomes]
rs6696964	0.81[ASN][1000 genomes]
rs6700193	0.83[ASN][1000 genomes]
rs715421	0.81[AMR][1000 genomes]
rs724139	0.83[ASN][1000 genomes]
rs7552225	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs896403	0.93[EUR][1000 genomes]
rs896404	0.93[EUR][1000 genomes]
rs9787101	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv3332610	chr1:166111288-166282689	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1012972	chr1:166166695-166206473	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1009639	chr1:166174369-166222405	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv998231	chr1:166174516-166228386	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166172800-166175600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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