Variant report

Variant	rs10800200
Chromosome Location	chr1:166157440-166157441
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:166157193..166157694-chr12:56843178..56843678,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000111602	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10494453	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10494455	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10494456	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10753713	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10753714	0.83[ASN][1000 genomes]
rs10800198	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10800199	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10800202	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10918381	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10918383	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10918384	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10918385	0.93[EUR][1000 genomes]
rs10918387	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10918388	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12023523	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12028067	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12031538	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12076837	0.91[EUR][1000 genomes]
rs12126834	0.93[EUR][1000 genomes]
rs12136704	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12144426	0.93[EUR][1000 genomes]
rs12402371	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12409766	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12734750	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1432119	0.93[EUR][1000 genomes]
rs1529642	0.91[EUR][1000 genomes]
rs1530889	0.91[EUR][1000 genomes]
rs1551179	0.95[EUR][1000 genomes]
rs1560570	0.82[ASN][1000 genomes]
rs16856734	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1864791	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116519	0.91[EUR][1000 genomes]
rs28568389	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4147072	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4378185	0.81[AMR][1000 genomes]
rs4391646	0.82[ASN][1000 genomes]
rs4556335	0.83[ASN][1000 genomes]
rs4656481	0.90[EUR][1000 genomes]
rs4656484	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4656485	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4657530	0.93[EUR][1000 genomes]
rs61835144	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61835149	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61835150	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61835151	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6658248	0.83[ASN][1000 genomes]
rs6658513	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6681924	0.93[EUR][1000 genomes]
rs6696964	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6700193	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs715421	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs724139	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7548172	0.95[EUR][1000 genomes]
rs7552225	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9787101	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9787239	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv3332610	chr1:166111288-166282689	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166147600-166165800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:166154600-166158200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:166155200-166158200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:166155400-166158200	Weak transcription	HMEC	breast
5	chr1:166155400-166158400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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