Variant report

Variant	rs6681924
Chromosome Location	chr1:166141817-166141818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:166135605..166138468-chr1:166140855..166143824,3	K562	blood:

Variant related genes	Relation type
ENSG00000188859	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10494453	0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs10494455	0.93[EUR][1000 genomes]
rs10800198	0.85[GIH][hapmap];0.87[TSI][hapmap];0.93[EUR][1000 genomes]
rs10800199	0.93[EUR][1000 genomes]
rs10800200	0.93[EUR][1000 genomes]
rs10918369	0.94[ASW][hapmap];0.86[CEU][hapmap];0.80[CHD][hapmap];0.80[GIH][hapmap];0.81[MKK][hapmap];0.92[TSI][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs10918381	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10918383	0.93[EUR][1000 genomes]
rs10918384	0.93[EUR][1000 genomes]
rs10918385	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12023523	0.93[EUR][1000 genomes]
rs12031538	0.91[EUR][1000 genomes]
rs12076837	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12126834	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12136704	0.91[EUR][1000 genomes]
rs12144426	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12402371	0.93[EUR][1000 genomes]
rs12409766	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12734750	0.82[JPT][hapmap];0.94[EUR][1000 genomes]
rs1432119	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1529642	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1530889	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1551179	0.90[EUR][1000 genomes]
rs1864791	0.93[EUR][1000 genomes]
rs2116519	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4074897	1.00[ASW][hapmap];0.86[CEU][hapmap];0.80[CHD][hapmap];0.80[GIH][hapmap];0.82[MKK][hapmap];0.92[TSI][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4656481	0.94[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4656484	0.93[EUR][1000 genomes]
rs4656485	0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4657530	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6426968	0.86[CEU][hapmap];0.80[CHD][hapmap];0.92[TSI][hapmap]
rs6696964	0.91[EUR][1000 genomes]
rs6698285	1.00[ASW][hapmap];0.86[CEU][hapmap];0.82[CHD][hapmap];0.82[MKK][hapmap];0.84[TSI][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6698973	1.00[ASW][hapmap];0.86[CEU][hapmap];0.80[GIH][hapmap];0.82[MKK][hapmap];0.92[TSI][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6700193	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs715421	0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs724139	0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7513325	0.94[ASW][hapmap];0.86[CEU][hapmap];0.80[CHD][hapmap];0.80[GIH][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs7548172	0.91[EUR][1000 genomes]
rs9787101	0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs9787239	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv3332610	chr1:166111288-166282689	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166136800-166145200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:166137000-166142600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:166137000-166142800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:166137000-166143600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:166137000-166144000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:166139600-166142400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr1:166139600-166142400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr1:166139600-166142600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr1:166139600-166142800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr1:166139800-166142400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr1:166140000-166142000	Enhancers	HMEC	breast
12	chr1:166140000-166142600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:166140200-166142800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr1:166140400-166143600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:166140800-166143400	Weak transcription	Gastric	stomach
16	chr1:166141000-166142000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:166141000-166142200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr1:166141200-166143000	Weak transcription	Brain Hippocampus Middle	brain
19	chr1:166141800-166143000	Weak transcription	GM12878-XiMat	blood
20	chr1:166141800-166146800	Weak transcription	Pancreas	Pancrea

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