Variant report

Variant	rs1529642
Chromosome Location	chr1:166129956-166129957
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:166127362..166130632-chr1:166131122..166135211,3	K562	blood:
2	chr1:166128277..166131609-chr1:166135442..166138684,3	K562	blood:

Variant related genes	Relation type
ENSG00000188859	Chromatin interaction
ENSG00000230898	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10494453	0.93[EUR][1000 genomes]
rs10494455	0.94[EUR][1000 genomes]
rs10800198	0.94[EUR][1000 genomes]
rs10800199	0.92[EUR][1000 genomes]
rs10800200	0.91[EUR][1000 genomes]
rs10918369	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10918381	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10918383	0.92[EUR][1000 genomes]
rs10918384	0.92[EUR][1000 genomes]
rs10918385	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12023523	0.92[EUR][1000 genomes]
rs12031538	0.93[EUR][1000 genomes]
rs12076837	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12126834	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12136704	0.93[EUR][1000 genomes]
rs12144426	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12402371	0.92[EUR][1000 genomes]
rs12409766	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12734750	0.93[EUR][1000 genomes]
rs1432119	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1530889	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551179	0.88[EUR][1000 genomes]
rs1864791	0.92[EUR][1000 genomes]
rs2116519	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4074897	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4656481	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4656484	0.91[EUR][1000 genomes]
rs4656485	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4657530	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6426968	0.81[EUR][1000 genomes]
rs6681924	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6696964	0.93[EUR][1000 genomes]
rs6698285	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6698973	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6700193	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs715421	0.93[EUR][1000 genomes]
rs724139	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7513325	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7548172	0.92[EUR][1000 genomes]
rs9787101	0.93[EUR][1000 genomes]
rs9787239	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv3332610	chr1:166111288-166282689	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166123800-166134000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:166127200-166130400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:166127200-166134000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:166128400-166134000	Weak transcription	Right Ventricle	heart
5	chr1:166128800-166130800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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