Variant report

Variant	rs12762427
Chromosome Location	chr10:92079491-92079492
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92079088..92081474-chr10:92085377..92088671,3	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10509599	0.86[ASN][1000 genomes]
rs10881777	0.86[ASN][1000 genomes]
rs10881778	0.86[ASN][1000 genomes]
rs11186118	0.86[ASN][1000 genomes]
rs11186119	0.86[ASN][1000 genomes]
rs11186120	0.86[ASN][1000 genomes]
rs12355886	0.86[ASN][1000 genomes]
rs12782505	0.86[ASN][1000 genomes]
rs12784906	0.86[ASN][1000 genomes]
rs12785026	0.86[ASN][1000 genomes]
rs1570991	0.86[ASN][1000 genomes]
rs2182383	0.86[ASN][1000 genomes]
rs2419663	0.86[ASN][1000 genomes]
rs2419665	0.86[ASN][1000 genomes]
rs2900955	0.86[ASN][1000 genomes]
rs3981442	0.86[ASN][1000 genomes]
rs4253986	0.86[ASN][1000 genomes]
rs6583699	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895883	chr10:91610601-92195828	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1039731	chr10:91645718-92198264	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv540743	chr10:91645718-92198264	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv467430	chr10:91681344-92297943	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv551875	chr10:91681344-92297943	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv3375393	chr10:91880933-92243227	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2422237	chr10:91940542-92547558	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1037720	chr10:92063438-92259359	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92076800-92080000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:92076800-92080600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr10:92076800-92081000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:92077000-92080600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr10:92077200-92080400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:92077800-92081200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr10:92078000-92080200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr10:92078000-92080200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:92078200-92079600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:92078400-92079600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:92078400-92079600	Enhancers	NHLF	lung
12	chr10:92078400-92079800	Enhancers	HUVEC	blood vessel
13	chr10:92078400-92080200	Enhancers	HMEC	breast
14	chr10:92078400-92080400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:92078400-92081200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:92078600-92079600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr10:92078600-92079600	Enhancers	HSMM	muscle
18	chr10:92078600-92080200	Enhancers	NH-A	brain
19	chr10:92078800-92079600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:92078800-92079600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:92078800-92079600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:92078800-92080200	Enhancers	A549	lung
23	chr10:92078800-92080400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:92079000-92079600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr10:92079000-92079600	Enhancers	NHDF-Ad	bronchial
26	chr10:92079200-92079600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:92079200-92079600	Enhancers	GM12878-XiMat	blood
28	chr10:92079200-92080200	Weak transcription	Placenta	Placenta
29	chr10:92079200-92081200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr10:92079400-92079600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr10:92079400-92079600	Enhancers	NHEK	skin
32	chr10:92079400-92079600	Flanking Active TSS	Osteobl	bone
33	chr10:92079400-92079800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:92079400-92079800	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr10:92079400-92080400	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr10:92079400-92080600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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