Variant report

Variant	rs12764439
Chromosome Location	chr10:89493829-89493830
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89421574..89423423-chr10:89493587..89495156,2	MCF-7	breast:
2	chr10:89417900..89422022-chr10:89491019..89499459,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198682	Chromatin interaction
ENSG00000196566	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10082347	0.81[EUR][1000 genomes]
rs1051441	0.83[EUR][1000 genomes]
rs11202536	0.83[EUR][1000 genomes]
rs11202538	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11202553	0.80[EUR][1000 genomes]
rs11202557	0.80[EUR][1000 genomes]
rs11816798	0.80[EUR][1000 genomes]
rs11817759	0.80[EUR][1000 genomes]
rs11818430	0.80[EUR][1000 genomes]
rs12247482	0.80[EUR][1000 genomes]
rs12253113	0.83[EUR][1000 genomes]
rs12413371	0.81[EUR][1000 genomes]
rs12570639	0.80[EUR][1000 genomes]
rs12571331	0.81[AFR][1000 genomes]
rs12573160	0.80[EUR][1000 genomes]
rs12573349	0.80[EUR][1000 genomes]
rs12762914	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12765184	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12768487	0.82[EUR][1000 genomes]
rs12770684	0.80[EUR][1000 genomes]
rs12771188	0.80[EUR][1000 genomes]
rs12775041	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12776656	0.82[EUR][1000 genomes]
rs12778199	0.80[EUR][1000 genomes]
rs12780234	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12782128	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12782235	0.80[EUR][1000 genomes]
rs12783598	0.80[EUR][1000 genomes]
rs1819162	0.80[EUR][1000 genomes]
rs1819163	0.80[EUR][1000 genomes]
rs1923260	0.80[EUR][1000 genomes]
rs1923261	0.80[EUR][1000 genomes]
rs1923262	0.80[EUR][1000 genomes]
rs1993845	0.80[EUR][1000 genomes]
rs2057358	0.83[EUR][1000 genomes]
rs34325090	0.83[EUR][1000 genomes]
rs34466534	0.83[EUR][1000 genomes]
rs34559481	0.82[EUR][1000 genomes]
rs34878240	0.83[EUR][1000 genomes]
rs35254974	0.83[EUR][1000 genomes]
rs35388513	0.81[AFR][1000 genomes]
rs35814940	0.81[AFR][1000 genomes]
rs3740278	0.81[EUR][1000 genomes]
rs4933461	0.82[AFR][1000 genomes]
rs6586101	0.82[AFR][1000 genomes]
rs6586102	0.80[EUR][1000 genomes]
rs66863455	0.83[EUR][1000 genomes]
rs7073644	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7090432	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7096449	0.83[EUR][1000 genomes]
rs7480	0.83[EUR][1000 genomes]
rs7481	0.83[EUR][1000 genomes]
rs7901767	0.81[AFR][1000 genomes]
rs7904344	0.84[EUR][1000 genomes]
rs7905932	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7908203	0.83[EUR][1000 genomes]
rs7910692	0.80[EUR][1000 genomes]
rs7920554	0.82[AFR][1000 genomes]
rs7920778	0.83[EUR][1000 genomes]
rs7921889	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9651491	0.80[EUR][1000 genomes]
rs9663978	0.80[EUR][1000 genomes]
rs9664653	0.80[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12764439	ATAD1	cis	lung	GTEx

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89460400-89512000	Weak transcription	HSMM	muscle
2	chr10:89462200-89494800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:89463000-89494600	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:89463000-89541400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:89466200-89494600	Weak transcription	A549	lung
6	chr10:89466800-89494600	Weak transcription	Hela-S3	cervix
7	chr10:89468600-89494000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:89472400-89503000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:89473000-89577200	Weak transcription	Gastric	stomach
10	chr10:89473600-89494000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:89476000-89494600	Weak transcription	NHDF-Ad	bronchial
12	chr10:89476200-89494000	Weak transcription	Fetal Stomach	stomach
13	chr10:89476200-89494600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:89476200-89542400	Weak transcription	Pancreas	Pancrea
15	chr10:89476400-89494000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr10:89476400-89494800	Weak transcription	Spleen	Spleen
17	chr10:89476400-89504800	Weak transcription	Left Ventricle	heart
18	chr10:89477200-89494800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr10:89477400-89500000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:89478000-89494800	Weak transcription	Ovary	ovary
21	chr10:89483200-89503200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr10:89483600-89494600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr10:89483600-89494800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:89484000-89494000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:89484600-89494200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:89484600-89494200	Strong transcription	Osteobl	bone
27	chr10:89486600-89494000	Strong transcription	Liver	Liver
28	chr10:89487200-89494000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:89487400-89503200	Weak transcription	Colonic Mucosa	Colon
30	chr10:89487600-89494800	Weak transcription	Placenta	Placenta
31	chr10:89487800-89494600	Weak transcription	NH-A	brain
32	chr10:89488000-89494600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr10:89488000-89494600	Weak transcription	Fetal Lung	lung
34	chr10:89488000-89494800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr10:89488000-89501600	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr10:89488600-89496600	Weak transcription	Lung	lung
37	chr10:89489400-89494800	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr10:89490000-89499800	Weak transcription	Fetal Intestine Large	intestine
39	chr10:89490000-89503000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr10:89490200-89494200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr10:89490200-89494600	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr10:89490200-89494800	Weak transcription	Fetal Intestine Small	intestine
43	chr10:89490400-89494000	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr10:89490800-89511400	Weak transcription	Primary B cells from cord blood	blood
45	chr10:89491400-89494200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:89491800-89495600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr10:89492400-89494200	Strong transcription	NHLF	lung
48	chr10:89492600-89494000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr10:89493000-89494400	Weak transcription	HUVEC	blood vessel
50	chr10:89493000-89494600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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