Variant report

Variant	rs11202536
Chromosome Location	chr10:89504392-89504393
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10082347	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10218936	0.81[AMR][1000 genomes]
rs1051441	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10887745	0.81[YRI][hapmap]
rs10887746	0.81[YRI][hapmap]
rs10887753	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11202531	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11202553	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11202557	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11202563	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11202564	0.88[CEU][hapmap]
rs11202565	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11202568	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11202571	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11498630	0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11812787	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11816798	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11817759	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11818430	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12247482	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12253113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12413371	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12570131	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12570639	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12571331	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572346	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12572581	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12573160	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12573349	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12762731	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12764439	0.83[EUR][1000 genomes]
rs12765184	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12765681	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12768487	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12769214	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12769771	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12770433	0.85[EUR][1000 genomes]
rs12770684	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12771188	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12771844	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12772552	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12773536	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12775017	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12775041	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs12776656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12778199	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12779667	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12779915	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12780234	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12780237	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12781171	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12782128	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12782235	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12782454	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12783598	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17096702	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1819162	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1819163	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1853167	0.88[CEU][hapmap]
rs1923260	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1923261	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1923262	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1960047	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1993845	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2038554	0.95[CEU][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2057358	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2067661	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2306157	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34325090	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34466534	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34559481	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34878240	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35254974	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35388513	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35662941	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35814940	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3740278	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3781187	0.86[YRI][hapmap]
rs3816651	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4443987	0.89[EUR][1000 genomes]
rs6586102	1.00[CEU][hapmap];0.96[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66863455	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7068030	0.81[YRI][hapmap]
rs7068497	0.87[CEU][hapmap]
rs7073644	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080206	0.81[YRI][hapmap]
rs7090088	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7090432	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096449	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7097745	0.81[YRI][hapmap]
rs7098653	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7480	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7481	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7898915	0.87[CEU][hapmap]
rs7901767	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905932	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908203	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7910692	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7913763	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920910	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7921889	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651491	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9663978	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9664653	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89460400-89512000	Weak transcription	HSMM	muscle
2	chr10:89463000-89541400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:89473000-89577200	Weak transcription	Gastric	stomach
4	chr10:89476200-89542400	Weak transcription	Pancreas	Pancrea
5	chr10:89476400-89504800	Weak transcription	Left Ventricle	heart
6	chr10:89490800-89511400	Weak transcription	Primary B cells from cord blood	blood
7	chr10:89495000-89512200	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:89495000-89514000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:89495000-89541400	Weak transcription	Right Ventricle	heart
10	chr10:89495000-89576400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:89495200-89504600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr10:89495200-89505000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:89495200-89509000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr10:89495200-89509000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:89495200-89509600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr10:89495200-89511800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr10:89495200-89514000	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:89495200-89515600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:89495200-89530600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr10:89495200-89542600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:89495200-89544600	Weak transcription	Brain Substantia Nigra	brain
22	chr10:89495200-89559200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr10:89495200-89577400	Weak transcription	Spleen	Spleen
24	chr10:89495400-89525600	Weak transcription	Brain Hippocampus Middle	brain
25	chr10:89495600-89513000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:89498200-89519400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:89498200-89541400	Weak transcription	Aorta	Aorta
28	chr10:89498800-89536200	Weak transcription	Small Intestine	intestine
29	chr10:89499800-89511200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:89500600-89505200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr10:89500600-89511800	Weak transcription	HMEC	breast
32	chr10:89500600-89513000	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr10:89500800-89505000	Weak transcription	A549	lung
34	chr10:89501000-89506200	Strong transcription	Fetal Intestine Small	intestine
35	chr10:89501000-89507000	Strong transcription	Osteobl	bone
36	chr10:89501000-89509600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:89501000-89511600	Weak transcription	Hela-S3	cervix
38	chr10:89501400-89508800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:89501600-89507000	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr10:89502000-89508600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:89502200-89505600	Strong transcription	Fetal Lung	lung
42	chr10:89502200-89507000	Strong transcription	NHLF	lung
43	chr10:89502400-89506800	Strong transcription	Ovary	ovary
44	chr10:89502400-89507400	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr10:89502600-89505600	Strong transcription	Fetal Intestine Large	intestine
46	chr10:89502600-89506800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr10:89502600-89507000	Strong transcription	Lung	lung
48	chr10:89502600-89508400	Strong transcription	HUVEC	blood vessel
49	chr10:89502800-89506800	Strong transcription	Adipose Nuclei	Adipose
50	chr10:89502800-89511000	Strong transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links