Variant report

Variant	rs4443987
Chromosome Location	chr10:89571707-89571708
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89571592..89573409-chr10:89582904..89584628,2	K562	blood:
2	chr10:89566431..89568592-chr10:89569858..89571983,2	MCF-7	breast:

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10082347	0.87[EUR][1000 genomes]
rs1051441	0.90[EUR][1000 genomes]
rs10887748	0.81[YRI][hapmap]
rs10887749	0.82[YRI][hapmap]
rs10887750	0.82[YRI][hapmap]
rs10887753	0.96[EUR][1000 genomes]
rs11202526	0.81[YRI][hapmap]
rs11202527	0.82[YRI][hapmap]
rs11202536	0.89[EUR][1000 genomes]
rs11202538	0.93[YRI][hapmap];0.90[EUR][1000 genomes]
rs11202553	0.94[EUR][1000 genomes]
rs11202557	0.94[EUR][1000 genomes]
rs11202563	0.96[EUR][1000 genomes]
rs11202565	0.96[EUR][1000 genomes]
rs11202568	0.84[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs11202571	0.97[EUR][1000 genomes]
rs11498630	0.96[EUR][1000 genomes]
rs11812787	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11816798	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs11817759	0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs11818430	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12247482	0.94[EUR][1000 genomes]
rs12253113	0.90[EUR][1000 genomes]
rs12413371	0.89[EUR][1000 genomes]
rs12570131	0.96[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12570639	0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12571331	0.81[EUR][1000 genomes]
rs12572346	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12572581	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12573160	0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12573349	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12762731	0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12765184	0.90[EUR][1000 genomes]
rs12765681	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12768487	0.89[EUR][1000 genomes]
rs12769214	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12769771	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12770433	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12770684	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12771188	0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12771844	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12772552	0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12773536	0.97[EUR][1000 genomes]
rs12775017	0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12775041	0.92[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12776656	0.91[EUR][1000 genomes]
rs12778199	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12779667	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12779915	0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs12780234	0.87[EUR][1000 genomes]
rs12780237	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12781171	0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12782128	0.90[EUR][1000 genomes]
rs12782235	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12782454	0.95[EUR][1000 genomes]
rs12783598	0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs17096702	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1819162	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1819163	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1923260	0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1923261	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1923262	0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1960047	0.97[EUR][1000 genomes]
rs1993845	0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2038554	0.91[EUR][1000 genomes]
rs2057358	0.93[YRI][hapmap];0.90[EUR][1000 genomes]
rs2067661	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2306157	0.94[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs34325090	0.90[EUR][1000 genomes]
rs34466534	0.90[EUR][1000 genomes]
rs34559481	0.89[EUR][1000 genomes]
rs34878240	0.90[EUR][1000 genomes]
rs35254974	0.90[EUR][1000 genomes]
rs35388513	0.81[EUR][1000 genomes]
rs35662941	0.82[EUR][1000 genomes]
rs35814940	0.80[EUR][1000 genomes]
rs3740278	0.87[EUR][1000 genomes]
rs3816651	0.83[YRI][hapmap];0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs4933461	0.82[YRI][hapmap]
rs4934363	0.81[YRI][hapmap]
rs4934364	0.82[YRI][hapmap]
rs4934366	0.81[YRI][hapmap]
rs4934367	0.81[YRI][hapmap]
rs4934369	0.82[AFR][1000 genomes]
rs6586102	0.94[EUR][1000 genomes]
rs66863455	0.90[EUR][1000 genomes]
rs7073644	0.89[EUR][1000 genomes]
rs7090088	0.91[EUR][1000 genomes]
rs7090432	0.89[EUR][1000 genomes]
rs7096449	0.90[EUR][1000 genomes]
rs7098653	0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7480	0.90[EUR][1000 genomes]
rs7481	0.84[YRI][hapmap];0.90[EUR][1000 genomes]
rs7901767	0.80[EUR][1000 genomes]
rs7904344	0.83[EUR][1000 genomes]
rs7905932	0.87[EUR][1000 genomes]
rs7908203	0.90[EUR][1000 genomes]
rs7910692	0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7913763	0.81[EUR][1000 genomes]
rs7920554	0.81[YRI][hapmap]
rs7920778	0.84[EUR][1000 genomes]
rs7920910	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7921017	0.81[YRI][hapmap]
rs7921889	0.87[EUR][1000 genomes]
rs9651491	0.94[EUR][1000 genomes]
rs9663978	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9664653	0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518233	chr10:89512839-89584002	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041462	chr10:89518729-89584284	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89473000-89577200	Weak transcription	Gastric	stomach
2	chr10:89495000-89576400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:89495200-89577400	Weak transcription	Spleen	Spleen
4	chr10:89511000-89576800	Weak transcription	Colonic Mucosa	Colon
5	chr10:89513400-89577000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:89520600-89575600	Weak transcription	Stomach Mucosa	stomach
7	chr10:89527400-89575000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:89530800-89575800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:89536200-89574600	Weak transcription	Brain Anterior Caudate	brain
10	chr10:89537000-89576400	Weak transcription	HSMMtube	muscle
11	chr10:89541800-89575000	Weak transcription	Right Ventricle	heart
12	chr10:89543200-89572200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:89543400-89577200	Weak transcription	Aorta	Aorta
14	chr10:89548200-89574800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr10:89549400-89575400	Weak transcription	Brain Angular Gyrus	brain
16	chr10:89550000-89572200	Weak transcription	HUVEC	blood vessel
17	chr10:89554400-89577200	Weak transcription	Pancreas	Pancrea
18	chr10:89556200-89573800	Strong transcription	HSMM	muscle
19	chr10:89557000-89575000	Weak transcription	Adipose Nuclei	Adipose
20	chr10:89557000-89575800	Weak transcription	NH-A	brain
21	chr10:89558000-89573400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:89560600-89575000	Weak transcription	Small Intestine	intestine
23	chr10:89560800-89575600	Weak transcription	Fetal Brain Male	brain
24	chr10:89561600-89576600	Weak transcription	Fetal Kidney	kidney
25	chr10:89561800-89576200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr10:89562200-89574600	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr10:89562200-89574800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr10:89562400-89575000	Weak transcription	Psoas Muscle	Psoas
29	chr10:89562400-89577400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:89562600-89575600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr10:89563000-89573000	Strong transcription	Fetal Thymus	thymus
32	chr10:89563000-89576600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr10:89563600-89574200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr10:89563600-89574400	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr10:89563600-89575400	Weak transcription	Colon Smooth Muscle	Colon
36	chr10:89563800-89576600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr10:89563800-89577400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:89564000-89575000	Weak transcription	Fetal Heart	heart
39	chr10:89564000-89577200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:89564400-89574400	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr10:89564400-89577200	Weak transcription	Lung	lung
42	chr10:89564800-89571800	Weak transcription	Thymus	Thymus
43	chr10:89564800-89572200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr10:89564800-89574400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:89564800-89575600	Weak transcription	Brain Substantia Nigra	brain
46	chr10:89565000-89574200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr10:89565200-89577000	Weak transcription	Ovary	ovary
48	chr10:89565600-89575000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr10:89565800-89572600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr10:89565800-89574400	Strong transcription	HUES6 Cell Line	embryonic stem cell

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