Variant report

Variant	rs4934367
Chromosome Location	chr10:89485295-89485296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10788564	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10788566	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10887745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10887746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10887748	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10887749	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10887750	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10887751	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11202525	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11202526	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11202527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11202530	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11202538	0.89[YRI][hapmap]
rs11596283	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11813070	0.82[CEU][hapmap]
rs11817759	0.89[YRI][hapmap]
rs12414218	0.82[CEU][hapmap]
rs12414519	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12570639	0.89[YRI][hapmap]
rs12573160	0.89[YRI][hapmap]
rs12762731	0.89[YRI][hapmap]
rs12771188	0.89[YRI][hapmap]
rs12772552	0.89[YRI][hapmap]
rs12775017	0.89[YRI][hapmap]
rs12775041	0.89[YRI][hapmap]
rs12779915	0.89[YRI][hapmap]
rs12781171	0.89[YRI][hapmap]
rs12783598	0.89[YRI][hapmap]
rs1853168	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923260	0.89[YRI][hapmap]
rs1923262	0.85[YRI][hapmap]
rs1993845	0.89[YRI][hapmap]
rs2057358	0.89[YRI][hapmap]
rs2302406	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2302407	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34783121	0.87[EUR][1000 genomes]
rs3781187	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3781188	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3781189	0.82[CEU][hapmap]
rs3781190	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3815417	1.00[CEU][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4443987	0.81[YRI][hapmap]
rs4933459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4933460	0.82[CEU][hapmap]
rs4933461	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4934363	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934366	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586101	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7068030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7073722	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7073724	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7079187	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7080206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080768	0.82[CEU][hapmap]
rs7081055	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7088594	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7098653	0.89[YRI][hapmap]
rs7481	0.85[YRI][hapmap]
rs7896505	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7898500	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7907791	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7908313	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7910692	0.92[YRI][hapmap]
rs7919607	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7920554	0.88[ASW][hapmap];1.00[CEU][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7921017	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9664653	0.81[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4934367	PAPSS2	cis	Muscle Skeletal	GTEx

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89460400-89512000	Weak transcription	HSMM	muscle
2	chr10:89462200-89494800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:89463000-89489400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:89463000-89494600	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:89463000-89541400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:89466200-89494600	Weak transcription	A549	lung
7	chr10:89466800-89494600	Weak transcription	Hela-S3	cervix
8	chr10:89468600-89494000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:89470200-89487000	Weak transcription	Aorta	Aorta
10	chr10:89470600-89493800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr10:89472400-89503000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:89473000-89577200	Weak transcription	Gastric	stomach
13	chr10:89473600-89494000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:89473800-89493600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:89475200-89485600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:89475400-89487000	Weak transcription	Placenta	Placenta
17	chr10:89476000-89487000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:89476000-89494600	Weak transcription	NHDF-Ad	bronchial
19	chr10:89476200-89489800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr10:89476200-89489800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr10:89476200-89494000	Weak transcription	Fetal Stomach	stomach
22	chr10:89476200-89494600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:89476200-89542400	Weak transcription	Pancreas	Pancrea
24	chr10:89476400-89494000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr10:89476400-89494800	Weak transcription	Spleen	Spleen
26	chr10:89476400-89504800	Weak transcription	Left Ventricle	heart
27	chr10:89477000-89489800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr10:89477200-89494800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr10:89477400-89500000	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr10:89478000-89494800	Weak transcription	Ovary	ovary
31	chr10:89482800-89486800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:89483200-89486400	Weak transcription	NHLF	lung
33	chr10:89483200-89503200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr10:89483400-89487000	Weak transcription	NH-A	brain
35	chr10:89483600-89487000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr10:89483600-89494600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr10:89483600-89494800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:89483800-89486600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr10:89483800-89486800	Weak transcription	Colonic Mucosa	Colon
40	chr10:89483800-89487000	Weak transcription	HSMMtube	muscle
41	chr10:89483800-89488800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr10:89483800-89489200	Weak transcription	Fetal Intestine Small	intestine
43	chr10:89484000-89489200	Weak transcription	Fetal Intestine Large	intestine
44	chr10:89484000-89494000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:89484200-89489000	Weak transcription	HUVEC	blood vessel
46	chr10:89484600-89488600	Strong transcription	Lung	lung
47	chr10:89484600-89494200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr10:89484600-89494200	Strong transcription	Osteobl	bone
49	chr10:89484800-89485800	Strong transcription	Liver	Liver
50	chr10:89484800-89491800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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