The 2.0 version of rSNPBase

Variant report

Variant rs3781188
Chromosome Location chr10:89476910-89476911
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:89460400-89512000 Weak transcription HSMM muscle
2 chr10:89462200-89494800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr10:89462400-89482600 Weak transcription Small Intestine intestine
4 chr10:89462400-89482800 Weak transcription Colonic Mucosa Colon
5 chr10:89463000-89489400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr10:89463000-89494600 Weak transcription Fetal Muscle Leg muscle
7 chr10:89463000-89541400 Weak transcription Rectal Smooth Muscle rectum
8 chr10:89466200-89494600 Weak transcription A549 lung
9 chr10:89466800-89494600 Weak transcription Hela-S3 cervix
10 chr10:89467800-89480200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr10:89468200-89482800 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr10:89468600-89494000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr10:89468800-89483200 Strong transcription Osteobl bone
14 chr10:89469200-89477200 Strong transcription NHLF lung
15 chr10:89469200-89481800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
16 chr10:89469600-89477200 Strong transcription Sigmoid Colon Sigmoid Colon
17 chr10:89469600-89479000 Strong transcription Rectal Mucosa Donor 29 rectum
18 chr10:89469800-89477800 Strong transcription Fetal Intestine Large intestine
19 chr10:89469800-89479600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
20 chr10:89470200-89480000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr10:89470200-89487000 Weak transcription Aorta Aorta
22 chr10:89470600-89493800 Weak transcription iPS-15b Cell Line embryonic stem cell
23 chr10:89472400-89503000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr10:89472800-89477000 Strong transcription Rectal Mucosa Donor 31 rectum
25 chr10:89473000-89477000 Strong transcription HUES48 Cell Line embryonic stem cell
26 chr10:89473000-89477200 Genic enhancers HUVEC blood vessel
27 chr10:89473000-89477200 Strong transcription NH-A brain
28 chr10:89473000-89482400 Weak transcription Fetal Kidney kidney
29 chr10:89473000-89577200 Weak transcription Gastric stomach
30 chr10:89473600-89494000 Weak transcription ES-I3 Cell Line embryonic stem cell
31 chr10:89473800-89493600 Weak transcription H9 Cell Line embryonic stem cell
32 chr10:89474800-89477200 Strong transcription Fetal Lung lung
33 chr10:89475000-89478400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
34 chr10:89475200-89485600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr10:89475400-89477400 Strong transcription Pancreatic Islets Pancreatic Islet
36 chr10:89475400-89478000 Enhancers Ovary ovary
37 chr10:89475400-89487000 Weak transcription Placenta Placenta
38 chr10:89475800-89477000 Enhancers Right Ventricle heart
39 chr10:89475800-89477200 Strong transcription Breast Myoepithelial Primary Cells Breast
40 chr10:89475800-89477200 Enhancers Right Atrium heart
41 chr10:89476000-89477200 Genic enhancers Fetal Adrenal Gland Adrenal Gland
42 chr10:89476000-89482800 Weak transcription Duodenum Mucosa Duodenum
43 chr10:89476000-89483000 Weak transcription Muscle Satellite Cultured Cells --
44 chr10:89476000-89487000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr10:89476000-89494600 Weak transcription NHDF-Ad bronchial
46 chr10:89476200-89478600 Weak transcription H1 Cell Line embryonic stem cell
47 chr10:89476200-89480200 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr10:89476200-89481200 Weak transcription iPS-18 Cell Line embryonic stem cell
49 chr10:89476200-89482800 Strong transcription Liver Liver
50 chr10:89476200-89489800 Weak transcription HUES64 Cell Line embryonic stem cell

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Last update: Aug 31, 2015