Variant report

Variant	rs12770433
Chromosome Location	chr10:89581131-89581132
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89579775..89581930-chr10:89585369..89587872,2	MCF-7	breast:
2	chr10:89575517..89578014-chr10:89580293..89583592,3	K562	blood:

Variant related genes	Relation type
ENSG00000223820	Chromatin interaction
ENSG00000138138	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10082347	0.83[EUR][1000 genomes]
rs1051441	0.86[EUR][1000 genomes]
rs10887753	0.92[EUR][1000 genomes]
rs11202536	0.85[EUR][1000 genomes]
rs11202538	0.86[EUR][1000 genomes]
rs11202553	0.90[EUR][1000 genomes]
rs11202557	0.90[EUR][1000 genomes]
rs11202563	0.92[EUR][1000 genomes]
rs11202565	0.92[EUR][1000 genomes]
rs11202568	0.95[EUR][1000 genomes]
rs11202571	0.99[EUR][1000 genomes]
rs11498630	0.92[EUR][1000 genomes]
rs11812787	0.88[EUR][1000 genomes]
rs11816798	0.90[EUR][1000 genomes]
rs11817759	0.90[EUR][1000 genomes]
rs11818430	0.90[EUR][1000 genomes]
rs12247482	0.90[EUR][1000 genomes]
rs12253113	0.86[EUR][1000 genomes]
rs12413371	0.85[EUR][1000 genomes]
rs12570131	0.92[EUR][1000 genomes]
rs12570639	0.90[EUR][1000 genomes]
rs12572581	0.82[EUR][1000 genomes]
rs12573160	0.90[EUR][1000 genomes]
rs12573349	0.90[EUR][1000 genomes]
rs12762731	1.00[EUR][1000 genomes]
rs12765184	0.86[EUR][1000 genomes]
rs12765681	0.91[EUR][1000 genomes]
rs12768487	0.86[EUR][1000 genomes]
rs12769214	0.88[EUR][1000 genomes]
rs12769771	0.97[EUR][1000 genomes]
rs12770684	0.90[EUR][1000 genomes]
rs12771188	0.90[EUR][1000 genomes]
rs12771844	0.92[EUR][1000 genomes]
rs12772552	0.94[EUR][1000 genomes]
rs12773536	0.94[EUR][1000 genomes]
rs12775017	0.97[EUR][1000 genomes]
rs12775041	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12776656	0.87[EUR][1000 genomes]
rs12778199	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12779667	0.96[EUR][1000 genomes]
rs12779915	0.95[EUR][1000 genomes]
rs12780234	0.83[EUR][1000 genomes]
rs12780237	0.99[EUR][1000 genomes]
rs12781171	0.97[EUR][1000 genomes]
rs12782128	0.86[EUR][1000 genomes]
rs12782235	0.90[EUR][1000 genomes]
rs12782454	0.91[EUR][1000 genomes]
rs12783598	0.90[EUR][1000 genomes]
rs17096702	0.97[EUR][1000 genomes]
rs1819162	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1819163	0.90[EUR][1000 genomes]
rs1923260	0.90[EUR][1000 genomes]
rs1923261	0.90[EUR][1000 genomes]
rs1923262	0.90[EUR][1000 genomes]
rs1960047	0.94[EUR][1000 genomes]
rs1993845	0.90[EUR][1000 genomes]
rs2038554	0.87[EUR][1000 genomes]
rs2057358	0.86[EUR][1000 genomes]
rs2067661	0.96[EUR][1000 genomes]
rs2306157	0.97[EUR][1000 genomes]
rs34325090	0.86[EUR][1000 genomes]
rs34466534	0.86[EUR][1000 genomes]
rs34559481	0.86[EUR][1000 genomes]
rs34878240	0.86[EUR][1000 genomes]
rs35254974	0.86[EUR][1000 genomes]
rs3740278	0.83[EUR][1000 genomes]
rs3816651	1.00[EUR][1000 genomes]
rs4443987	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6586102	0.90[EUR][1000 genomes]
rs66863455	0.86[EUR][1000 genomes]
rs7073644	0.85[EUR][1000 genomes]
rs7090088	0.87[EUR][1000 genomes]
rs7090432	0.85[EUR][1000 genomes]
rs7096449	0.86[EUR][1000 genomes]
rs7098653	0.89[EUR][1000 genomes]
rs7480	0.86[EUR][1000 genomes]
rs7481	0.86[EUR][1000 genomes]
rs7905932	0.84[EUR][1000 genomes]
rs7908203	0.86[EUR][1000 genomes]
rs7910692	0.90[EUR][1000 genomes]
rs7920778	0.81[EUR][1000 genomes]
rs7920910	0.96[EUR][1000 genomes]
rs7921889	0.84[EUR][1000 genomes]
rs9651491	0.90[EUR][1000 genomes]
rs9663978	0.90[EUR][1000 genomes]
rs9664653	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518233	chr10:89512839-89584002	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041462	chr10:89518729-89584284	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89578800-89582200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:89579000-89587200	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:89579000-89596800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:89579200-89589800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:89580000-89585800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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