Variant report

Variant	rs7898915
Chromosome Location	chr10:89565953-89565954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89564584..89567110-chr10:89568918..89570948,2	K562	blood:
2	chr10:89565566..89567376-chr10:89574790..89577127,2	K562	blood:
3	chr10:89557779..89559626-chr10:89565125..89566841,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10082347	0.82[AMR][1000 genomes]
rs10218936	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10887752	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10887753	0.81[AMR][1000 genomes]
rs11202536	0.87[CEU][hapmap]
rs11202538	0.87[CEU][hapmap]
rs11202553	0.86[CEU][hapmap];0.81[AMR][1000 genomes]
rs11202555	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11202557	0.87[CEU][hapmap];0.81[AMR][1000 genomes]
rs11202563	0.81[AMR][1000 genomes]
rs11202564	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11202565	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11202571	0.87[CEU][hapmap];0.81[AMR][1000 genomes]
rs11498630	0.81[AMR][1000 genomes]
rs11816798	0.87[CEU][hapmap]
rs11817759	0.87[CEU][hapmap]
rs12247482	0.81[AMR][1000 genomes]
rs12253113	0.87[CEU][hapmap]
rs12414218	0.85[YRI][hapmap]
rs12570639	0.87[CEU][hapmap]
rs12573160	0.90[CEU][hapmap]
rs12762731	0.87[CEU][hapmap]
rs12769214	0.81[AMR][1000 genomes]
rs12769771	0.81[EUR][1000 genomes]
rs12771188	0.91[CEU][hapmap]
rs12772552	0.87[CEU][hapmap]
rs12773536	0.87[CEU][hapmap];0.81[AMR][1000 genomes]
rs12775017	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs12775041	0.87[CEU][hapmap]
rs12778199	0.87[CEU][hapmap]
rs12779915	0.87[CEU][hapmap]
rs12780237	0.87[CEU][hapmap]
rs12781171	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs12782454	0.81[AMR][1000 genomes]
rs12783598	0.85[CEU][hapmap]
rs1321934	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17096702	0.81[EUR][1000 genomes]
rs1819162	0.87[CEU][hapmap]
rs1853167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1960047	0.81[AMR][1000 genomes]
rs1993845	0.87[CEU][hapmap]
rs2038554	0.82[CEU][hapmap];0.87[AMR][1000 genomes]
rs2057358	0.87[CEU][hapmap]
rs3816651	0.87[CEU][hapmap]
rs4933460	0.86[YRI][hapmap]
rs6586102	0.87[CEU][hapmap];0.81[AMR][1000 genomes]
rs7068497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7085412	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7090088	0.87[CEU][hapmap];0.87[AMR][1000 genomes]
rs7481	0.82[CEU][hapmap]
rs7904344	0.87[CEU][hapmap]
rs7910692	0.87[CEU][hapmap]
rs7920778	0.87[CEU][hapmap]
rs9651491	0.87[CEU][hapmap];0.81[AMR][1000 genomes]
rs9664653	0.87[CEU][hapmap];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518233	chr10:89512839-89584002	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041462	chr10:89518729-89584284	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89473000-89577200	Weak transcription	Gastric	stomach
2	chr10:89495000-89576400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:89495200-89577400	Weak transcription	Spleen	Spleen
4	chr10:89511000-89576800	Weak transcription	Colonic Mucosa	Colon
5	chr10:89513400-89577000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:89520600-89575600	Weak transcription	Stomach Mucosa	stomach
7	chr10:89527400-89575000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:89530800-89575800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:89536200-89574600	Weak transcription	Brain Anterior Caudate	brain
10	chr10:89537000-89576400	Weak transcription	HSMMtube	muscle
11	chr10:89541800-89575000	Weak transcription	Right Ventricle	heart
12	chr10:89542000-89571200	Weak transcription	Brain Hippocampus Middle	brain
13	chr10:89543000-89571400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:89543200-89572200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:89543400-89577200	Weak transcription	Aorta	Aorta
16	chr10:89548200-89574800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:89549400-89575400	Weak transcription	Brain Angular Gyrus	brain
18	chr10:89550000-89572200	Weak transcription	HUVEC	blood vessel
19	chr10:89552600-89566200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:89552800-89571400	Weak transcription	NHEK	skin
21	chr10:89553000-89570000	Weak transcription	HMEC	breast
22	chr10:89553200-89569800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr10:89554400-89570800	Weak transcription	Esophagus	oesophagus
24	chr10:89554400-89577200	Weak transcription	Pancreas	Pancrea
25	chr10:89556200-89573800	Strong transcription	HSMM	muscle
26	chr10:89556600-89569200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:89557000-89575000	Weak transcription	Adipose Nuclei	Adipose
28	chr10:89557000-89575800	Weak transcription	NH-A	brain
29	chr10:89557600-89567000	Weak transcription	Placenta	Placenta
30	chr10:89557800-89567200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:89558000-89569200	Weak transcription	Fetal Stomach	stomach
32	chr10:89558000-89573400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:89558800-89570400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:89559200-89569400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:89560000-89569400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
36	chr10:89560200-89567200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr10:89560200-89569400	Weak transcription	NHDF-Ad	bronchial
38	chr10:89560600-89575000	Weak transcription	Small Intestine	intestine
39	chr10:89560800-89575600	Weak transcription	Fetal Brain Male	brain
40	chr10:89561600-89571400	Weak transcription	Osteobl	bone
41	chr10:89561600-89576600	Weak transcription	Fetal Kidney	kidney
42	chr10:89561800-89570600	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr10:89561800-89576200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr10:89562000-89566400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:89562200-89566000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:89562200-89574600	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr10:89562200-89574800	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr10:89562400-89566200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr10:89562400-89571200	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr10:89562400-89571200	Weak transcription	Liver	Liver

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