Variant report

Variant	rs11202555
Chromosome Location	chr10:89546666-89546667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89545916..89549076-chr10:89574795..89578314,3	K562	blood:

Variant related genes	Relation type
ENSG00000223820	Chromatin interaction
ENSG00000138138	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10218936	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10887752	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11202564	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11202565	0.81[AMR][1000 genomes]
rs1321934	0.80[AMR][1000 genomes]
rs1853167	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7068497	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7085412	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7898915	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518233	chr10:89512839-89584002	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041462	chr10:89518729-89584284	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89473000-89577200	Weak transcription	Gastric	stomach
2	chr10:89495000-89576400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:89495200-89559200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:89495200-89577400	Weak transcription	Spleen	Spleen
5	chr10:89504200-89551800	Weak transcription	Psoas Muscle	Psoas
6	chr10:89507000-89557600	Weak transcription	Lung	lung
7	chr10:89510200-89553800	Weak transcription	Esophagus	oesophagus
8	chr10:89511000-89576800	Weak transcription	Colonic Mucosa	Colon
9	chr10:89512800-89560400	Weak transcription	Fetal Brain Male	brain
10	chr10:89513400-89577000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr10:89516400-89557800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr10:89518200-89556600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:89518400-89559000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr10:89520400-89556400	Weak transcription	Brain Germinal Matrix	brain
15	chr10:89520600-89575600	Weak transcription	Stomach Mucosa	stomach
16	chr10:89523200-89553000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:89523400-89562800	Weak transcription	K562	blood
18	chr10:89523800-89562000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr10:89524600-89560400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr10:89526000-89549000	Weak transcription	Brain Angular Gyrus	brain
21	chr10:89526200-89549400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:89527400-89553600	Weak transcription	Colon Smooth Muscle	Colon
23	chr10:89527400-89575000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr10:89527600-89554000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr10:89527600-89554200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr10:89527800-89547800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr10:89530800-89549800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:89530800-89575800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr10:89536200-89557800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr10:89536200-89574600	Weak transcription	Brain Anterior Caudate	brain
31	chr10:89536400-89549000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr10:89536600-89551000	Weak transcription	NHLF	lung
33	chr10:89537000-89560400	Weak transcription	Small Intestine	intestine
34	chr10:89537000-89576400	Weak transcription	HSMMtube	muscle
35	chr10:89538000-89552800	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr10:89538200-89558600	Strong transcription	Hela-S3	cervix
37	chr10:89538800-89556600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:89540000-89556600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:89540200-89551800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr10:89540200-89560000	Weak transcription	Fetal Kidney	kidney
41	chr10:89540200-89562800	Weak transcription	Fetal Heart	heart
42	chr10:89540800-89548600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr10:89540800-89560000	Weak transcription	Fetal Brain Female	brain
44	chr10:89540800-89563000	Weak transcription	Ovary	ovary
45	chr10:89541800-89548600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr10:89541800-89575000	Weak transcription	Right Ventricle	heart
47	chr10:89542000-89571200	Weak transcription	Brain Hippocampus Middle	brain
48	chr10:89542200-89547200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr10:89542600-89547400	Weak transcription	NH-A	brain
50	chr10:89542800-89556200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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