Variant report

Variant	rs10218936
Chromosome Location	chr10:89501306-89501307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89499726..89502476-chr10:89504728..89506282,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10082347	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10887752	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11202531	0.81[AMR][1000 genomes]
rs11202536	0.81[AMR][1000 genomes]
rs11202555	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11202564	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11202565	0.82[AMR][1000 genomes]
rs12253113	0.81[AMR][1000 genomes]
rs12776656	0.81[AMR][1000 genomes]
rs12780234	0.80[EUR][1000 genomes]
rs1321934	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1853167	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3740278	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7068497	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7085412	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7898915	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7904344	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7908203	0.81[AMR][1000 genomes]
rs7908641	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7920778	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89460400-89512000	Weak transcription	HSMM	muscle
2	chr10:89463000-89541400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:89472400-89503000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:89473000-89577200	Weak transcription	Gastric	stomach
5	chr10:89476200-89542400	Weak transcription	Pancreas	Pancrea
6	chr10:89476400-89504800	Weak transcription	Left Ventricle	heart
7	chr10:89483200-89503200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:89487400-89503200	Weak transcription	Colonic Mucosa	Colon
9	chr10:89488000-89501600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:89490000-89503000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:89490800-89511400	Weak transcription	Primary B cells from cord blood	blood
12	chr10:89494800-89503000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:89495000-89503000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:89495000-89512200	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:89495000-89514000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:89495000-89541400	Weak transcription	Right Ventricle	heart
17	chr10:89495000-89576400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:89495200-89501400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:89495200-89502400	Weak transcription	Ovary	ovary
20	chr10:89495200-89502600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr10:89495200-89502600	Weak transcription	HUVEC	blood vessel
22	chr10:89495200-89503000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:89495200-89503000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr10:89495200-89503000	Weak transcription	Fetal Stomach	stomach
25	chr10:89495200-89503200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:89495200-89503200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr10:89495200-89504200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr10:89495200-89504600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr10:89495200-89505000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr10:89495200-89509000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr10:89495200-89509000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:89495200-89509600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr10:89495200-89511800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr10:89495200-89514000	Weak transcription	Fetal Muscle Leg	muscle
35	chr10:89495200-89515600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr10:89495200-89530600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:89495200-89542600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr10:89495200-89544600	Weak transcription	Brain Substantia Nigra	brain
39	chr10:89495200-89559200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr10:89495200-89577400	Weak transcription	Spleen	Spleen
41	chr10:89495400-89502200	Weak transcription	Fetal Lung	lung
42	chr10:89495400-89525600	Weak transcription	Brain Hippocampus Middle	brain
43	chr10:89495600-89503000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr10:89495600-89513000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:89497200-89503000	Weak transcription	NH-A	brain
46	chr10:89497400-89502600	Weak transcription	Lung	lung
47	chr10:89497800-89502400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr10:89498200-89519400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr10:89498200-89541400	Weak transcription	Aorta	Aorta
50	chr10:89498800-89536200	Weak transcription	Small Intestine	intestine

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