Variant report

Variant	rs12769020
Chromosome Location	chr10:19335978-19335979
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10508572	0.87[EUR][1000 genomes]
rs10508573	0.93[EUR][1000 genomes]
rs12767593	0.82[EUR][1000 genomes]
rs12767646	0.93[EUR][1000 genomes]
rs12770262	0.93[EUR][1000 genomes]
rs12770274	0.93[EUR][1000 genomes]
rs12772717	0.93[EUR][1000 genomes]
rs12779079	0.93[EUR][1000 genomes]
rs12779415	0.80[EUR][1000 genomes]
rs12780245	0.93[EUR][1000 genomes]
rs12780348	0.82[EUR][1000 genomes]
rs12781326	0.83[EUR][1000 genomes]
rs12782198	0.93[EUR][1000 genomes]
rs12782873	0.83[EUR][1000 genomes]
rs12784603	0.93[EUR][1000 genomes]
rs12784622	0.93[EUR][1000 genomes]
rs12784782	0.93[EUR][1000 genomes]
rs12784919	0.93[EUR][1000 genomes]
rs1339054	0.84[EUR][1000 genomes]
rs16918153	0.91[EUR][1000 genomes]
rs1934055	0.80[EUR][1000 genomes]
rs2185202	0.93[EUR][1000 genomes]
rs34562958	0.83[EUR][1000 genomes]
rs34949183	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35308475	0.82[EUR][1000 genomes]
rs35971602	0.93[EUR][1000 genomes]
rs7077590	0.84[EUR][1000 genomes]
rs7085448	0.93[EUR][1000 genomes]
rs7089736	0.93[EUR][1000 genomes]
rs7097186	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894916	chr10:19095467-19429415	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv947593	chr10:19205323-19340510	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3493336	chr10:19216608-19378036	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3493337	chr10:19216667-19377987	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv427857	chr10:19253828-19599493	Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv894917	chr10:19259024-19463367	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv550126	chr10:19270068-19572729	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv528472	chr10:19296750-19385248	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1038358	chr10:19319711-19344810	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1049708	chr10:19319711-19347070	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1043004	chr10:19319970-19344810	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv516123	chr10:19320793-19344979	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv550127	chr10:19320793-19344979	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19335400-19341400	Active TSS	Duodenum Mucosa	Duodenum
2	chr10:19335600-19336000	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr10:19335600-19336200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr10:19335800-19340200	Active TSS	Fetal Intestine Small	intestine
5	chr10:19335800-19340400	Active TSS	Fetal Intestine Large	intestine

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