Variant report

Variant	rs12767593
Chromosome Location	chr10:19229281-19229282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr10:19228949-19229297	MCF10A-Er-Src	breast:	n/a	n/a
2	CEBPB	chr10:19229002-19229405	Hela-S3	cervix:	n/a	chr10:19229115-19229126 chr10:19229080-19229091

Variant related genes	Relation type
ENSG00000234813	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10508572	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10508573	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11815393	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11815790	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12767646	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12769020	0.82[EUR][1000 genomes]
rs12770262	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12770274	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12772717	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12779079	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12780245	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12780348	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12782198	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12782873	0.86[AMR][1000 genomes]
rs12784603	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12784622	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12784782	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12784919	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1339054	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16918153	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1887924	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2185202	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34562958	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35308475	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35971602	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7077590	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7082964	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7084729	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7085448	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7089736	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7097186	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894915	chr10:18984571-19257664	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv894916	chr10:19095467-19429415	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv550124	chr10:19205103-19307536	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv466763	chr10:19205103-19334637	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv470925	chr10:19205103-19334637	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv947593	chr10:19205323-19340510	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv3493336	chr10:19216608-19378036	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv3493337	chr10:19216667-19377987	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3384456	chr10:19229246-19231394	Inactive region	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links