Variant report

Variant	esv3384456
Chromosome Location	chr10:19229246-19231394
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:19228942-19229258	HepG2	liver:	n/a	chr10:19229115-19229126 chr10:19229080-19229091
2	CEBPB	chr10:19229002-19229405	Hela-S3	cervix:	n/a	chr10:19229115-19229126 chr10:19229080-19229091
3	CEBPB	chr10:19228950-19229265	IMR90	lung:	n/a	chr10:19229115-19229126 chr10:19229080-19229091
4	CEBPB	chr10:19228981-19229262	A549	lung:	n/a	chr10:19229115-19229126 chr10:19229080-19229091
5	CTCF	chr10:19230617-19230648	ProgFib	skin:	n/a	n/a
6	FOS	chr10:19228932-19229260	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr10:19228949-19229297	MCF10A-Er-Src	breast:	n/a	n/a
8	FOS	chr10:19228945-19229252	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr10:19228952-19229278	MCF10A-Er-Src	breast:	n/a	n/a
10	POLR2A	chr10:19231041-19231241	MCF10A-Er-Src	breast:	n/a	n/a
11	STAT3	chr10:19229030-19229256	MCF10A-Er-Src	breast:	n/a	n/a
12	STAT3	chr10:19229040-19229268	MCF10A-Er-Src	breast:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARL5B-7	chr10:19229430-19229882	NONHSAT011657

Variant related genes	Relation type
ENSG00000234813	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs571162225	chr10:19229249-19229250	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs12767593	chr10:19229281-19229282	Inactive region	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs71200977	chr10:19229312-19229313	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs10826690	chr10:19229313-19229314	Inactive region	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs541538334	chr10:19229319-19229320	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs11007738	chr10:19229322-19229323	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs553847808	chr10:19229358-19229359	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs115189958	chr10:19229360-19229361	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs10826691	chr10:19229394-19229395	Inactive region	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs563786856	chr10:19229400-19229401	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs531495462	chr10:19229405-19229406	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs543737465	chr10:19229454-19229455	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs561713709	chr10:19229491-19229492	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs374852658	chr10:19229570-19229571	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs536798712	chr10:19229580-19229581	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs369217171	chr10:19229581-19229582	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs560574531	chr10:19229598-19229599	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs138147207	chr10:19229599-19229600	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs7907800	chr10:19229606-19229607	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs7906865	chr10:19229638-19229639	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs7907812	chr10:19229645-19229646	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs550478758	chr10:19229657-19229658	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs7910929	chr10:19229675-19229676	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs536056146	chr10:19229699-19229700	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs577154294	chr10:19229718-19229719	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs192907357	chr10:19229722-19229723	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs185113652	chr10:19229792-19229793	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs79151335	chr10:19229818-19229819	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs533380723	chr10:19229821-19229822	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs7911092	chr10:19229823-19229824	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs149570795	chr10:19229837-19229838	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs543321194	chr10:19229842-19229843	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs146473936	chr10:19229881-19229882	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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