Variant report
| Variant | rs571162225 |
|---|---|
| Chromosome Location | chr10:19229249-19229250 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:10)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:10 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr10:19228942-19229258 | HepG2 | liver: | n/a | chr10:19229115-19229126 chr10:19229080-19229091 |
| 2 | FOS | chr10:19228949-19229297 | MCF10A-Er-Src | breast: | n/a | n/a |
| 3 | STAT3 | chr10:19229040-19229268 | MCF10A-Er-Src | breast: | n/a | n/a |
| 4 | CEBPB | chr10:19229002-19229405 | Hela-S3 | cervix: | n/a | chr10:19229115-19229126 chr10:19229080-19229091 |
| 5 | STAT3 | chr10:19229030-19229256 | MCF10A-Er-Src | breast: | n/a | n/a |
| 6 | FOS | chr10:19228952-19229278 | MCF10A-Er-Src | breast: | n/a | n/a |
| 7 | FOS | chr10:19228945-19229252 | MCF10A-Er-Src | breast: | n/a | n/a |
| 8 | CEBPB | chr10:19228950-19229265 | IMR90 | lung: | n/a | chr10:19229115-19229126 chr10:19229080-19229091 |
| 9 | FOS | chr10:19228932-19229260 | MCF10A-Er-Src | breast: | n/a | n/a |
| 10 | CEBPB | chr10:19228981-19229262 | A549 | lung: | n/a | chr10:19229115-19229126 chr10:19229080-19229091 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234813 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894915 | chr10:18984571-19257664 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv894916 | chr10:19095467-19429415 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv550124 | chr10:19205103-19307536 | Weak transcription Enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv466763 | chr10:19205103-19334637 | Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv470925 | chr10:19205103-19334637 | Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv947593 | chr10:19205323-19340510 | Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 7 | esv3493336 | chr10:19216608-19378036 | Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 8 | esv3493337 | chr10:19216667-19377987 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 9 | esv3384456 | chr10:19229246-19231394 | Inactive region | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
