Variant report

Variant	rs12775571
Chromosome Location	chr10:25983880-25983881
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11014671	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11014676	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11014680	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11014683	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11014685	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11014686	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12359179	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12762156	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12775944	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17664518	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35499719	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36023094	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4749061	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71495478	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25962800-25993600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:25978400-25985600	Enhancers	Primary B cells from peripheral blood	blood
3	chr10:25980200-25985600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:25980800-25985200	Enhancers	Primary B cells from cord blood	blood
5	chr10:25980800-25990000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:25983200-25984400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:25983400-25984400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:25983600-25984000	Enhancers	Primary hematopoietic stem cells	blood
9	chr10:25983600-25984200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr10:25983600-25984600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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