Variant report

Variant	rs36023094
Chromosome Location	chr10:25967400-25967401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11014671	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11014676	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014680	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11014683	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11014685	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11014686	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12359179	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12762156	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12775571	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12775944	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17664518	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35499719	0.81[EUR][1000 genomes]
rs4749061	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71495478	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044482	chr10:25889919-25977270	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25962800-25993600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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