Variant report

Variant	rs12775655
Chromosome Location	chr10:117916347-117916348
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12762003	0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12775807	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17094225	0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17094234	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2420242	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34104075	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34755001	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35175214	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4426065	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66765527	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117901800-117918000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:117915400-117916400	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:117915600-117916400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:117915600-117924200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:117916200-117917200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:117916200-117917800	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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