Variant report

Variant	rs12776459
Chromosome Location	chr10:92649298-92649299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92643406..92646204-chr10:92648887..92653001,3	K562	blood:
2	chr10:92643406..92644970-chr10:92648887..92651723,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10881830	0.85[ASN][1000 genomes]
rs12256352	0.85[ASN][1000 genomes]
rs12762083	0.88[ASN][1000 genomes]
rs12765470	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12768638	0.85[ASN][1000 genomes]
rs12775181	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34301914	0.85[ASN][1000 genomes]
rs34479797	0.88[ASN][1000 genomes]
rs35358531	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36038131	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92632800-92651000	Weak transcription	Psoas Muscle	Psoas
2	chr10:92632800-92663200	Weak transcription	Colonic Mucosa	Colon
3	chr10:92632800-92665400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:92632800-92668000	Weak transcription	Esophagus	oesophagus
5	chr10:92632800-92668200	Weak transcription	Small Intestine	intestine
6	chr10:92633200-92650000	Weak transcription	Fetal Heart	heart
7	chr10:92634000-92661400	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr10:92634000-92665400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:92634400-92653000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:92634400-92659000	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr10:92634400-92661800	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:92634800-92663600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:92635000-92656000	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr10:92635200-92655000	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr10:92635200-92655000	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr10:92635200-92658800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:92635200-92664200	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr10:92635200-92664400	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr10:92635200-92665400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:92635200-92665400	Strong transcription	Fetal Thymus	thymus
21	chr10:92635200-92668200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:92635400-92655200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr10:92635400-92656600	Strong transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:92635400-92661000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:92635800-92651400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr10:92636800-92671600	Weak transcription	Fetal Brain Male	brain
27	chr10:92637800-92652800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr10:92639000-92652600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr10:92639400-92658600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:92640800-92655200	Strong transcription	Primary B cells from peripheral blood	blood
31	chr10:92640800-92658800	Strong transcription	Dnd41	blood
32	chr10:92640800-92671600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr10:92641000-92658600	Strong transcription	Duodenum Mucosa	Duodenum
34	chr10:92641000-92658800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:92641600-92654400	Strong transcription	Fetal Brain Female	brain
36	chr10:92641800-92656200	Strong transcription	GM12878-XiMat	blood
37	chr10:92642200-92653400	Strong transcription	Brain Angular Gyrus	brain
38	chr10:92642400-92651000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr10:92643600-92649800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr10:92643600-92653600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr10:92643600-92658400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr10:92644200-92651200	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr10:92644200-92654000	Strong transcription	Left Ventricle	heart
44	chr10:92644200-92656600	Strong transcription	Primary T cells from cord blood	blood
45	chr10:92644400-92651600	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr10:92644400-92653200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr10:92644400-92654600	Strong transcription	Fetal Muscle Trunk	muscle
48	chr10:92644400-92655000	Strong transcription	H1 Cell Line	embryonic stem cell
49	chr10:92644400-92658400	Strong transcription	Primary hematopoietic stem cells	blood
50	chr10:92645000-92654600	Strong transcription	HepG2	liver

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